Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03370

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS03360 and BPHYT_RS03365 are separated by 58 nucleotidesBPHYT_RS03365 and BPHYT_RS03370 are separated by 211 nucleotidesBPHYT_RS03370 and BPHYT_RS03375 are separated by 15 nucleotidesBPHYT_RS03375 and BPHYT_RS03380 overlap by 1 nucleotides BPHYT_RS03360: BPHYT_RS03360 - tRNA-specific 2-thiouridylase MnmA, at 756,778 to 757,929 _RS03360 BPHYT_RS03365: BPHYT_RS03365 - NUDIX hydrolase, at 757,988 to 758,467 _RS03365 BPHYT_RS03370: BPHYT_RS03370 - NAD(P) transhydrogenase subunit alpha, at 758,679 to 759,821 _RS03370 BPHYT_RS03375: BPHYT_RS03375 - NAD(P) transhydrogenase, at 759,837 to 760,163 _RS03375 BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617 _RS03380 Position (kb) 758 759 760Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 757.930 kb on - strandat 757.930 kb on - strandat 758.052 kb on + strand, within BPHYT_RS03365at 758.052 kb on + strand, within BPHYT_RS03365at 758.053 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.251 kb on - strand, within BPHYT_RS03365at 758.755 kb on - strandat 758.829 kb on - strand, within BPHYT_RS03370at 758.966 kb on + strand, within BPHYT_RS03370at 758.966 kb on + strand, within BPHYT_RS03370at 759.090 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.103 kb on + strand, within BPHYT_RS03370at 759.367 kb on - strand, within BPHYT_RS03370at 759.647 kb on + strand, within BPHYT_RS03370at 759.647 kb on + strand, within BPHYT_RS03370at 759.819 kb on + strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.820 kb on - strandat 759.891 kb on + strand, within BPHYT_RS03375at 760.190 kb on + strandat 760.190 kb on + strandat 760.265 kb on - strandat 760.493 kb on - strand, within BPHYT_RS03380

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
remove
757,930 - +1.3
757,930 - +0.4
758,052 + BPHYT_RS03365 0.13 -2.9
758,052 + BPHYT_RS03365 0.13 -1.6
758,053 - BPHYT_RS03365 0.14 +0.4
758,251 - BPHYT_RS03365 0.55 +1.0
758,251 - BPHYT_RS03365 0.55 -0.2
758,251 - BPHYT_RS03365 0.55 +1.2
758,251 - BPHYT_RS03365 0.55 +0.0
758,251 - BPHYT_RS03365 0.55 +2.4
758,755 - +0.2
758,829 - BPHYT_RS03370 0.13 -0.9
758,966 + BPHYT_RS03370 0.25 -0.4
758,966 + BPHYT_RS03370 0.25 +1.1
759,090 + BPHYT_RS03370 0.36 -0.5
759,103 + BPHYT_RS03370 0.37 -0.7
759,103 + BPHYT_RS03370 0.37 +0.3
759,103 + BPHYT_RS03370 0.37 +0.3
759,367 - BPHYT_RS03370 0.60 +0.2
759,647 + BPHYT_RS03370 0.85 -0.2
759,647 + BPHYT_RS03370 0.85 +1.2
759,819 + -0.1
759,820 - +0.0
759,820 - -0.2
759,820 - +0.8
759,820 - +0.2
759,891 + BPHYT_RS03375 0.17 -0.1
760,190 + -1.0
760,190 + +0.4
760,265 - -0.0
760,493 - BPHYT_RS03380 0.23 -0.2

Or see this region's nucleotide sequence