Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03360 and BPHYT_RS03365 are separated by 58 nucleotides BPHYT_RS03365 and BPHYT_RS03370 are separated by 211 nucleotides BPHYT_RS03370 and BPHYT_RS03375 are separated by 15 nucleotides BPHYT_RS03375 and BPHYT_RS03380 overlap by 1 nucleotides
BPHYT_RS03360: BPHYT_RS03360 - tRNA-specific 2-thiouridylase MnmA, at 756,778 to 757,929
_RS03360
BPHYT_RS03365: BPHYT_RS03365 - NUDIX hydrolase, at 757,988 to 758,467
_RS03365
BPHYT_RS03370: BPHYT_RS03370 - NAD(P) transhydrogenase subunit alpha, at 758,679 to 759,821
_RS03370
BPHYT_RS03375: BPHYT_RS03375 - NAD(P) transhydrogenase, at 759,837 to 760,163
_RS03375
BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617
_RS03380
Position (kb) 758
759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 757.930 kb on - strand at 757.930 kb on - strand at 758.052 kb on + strand, within BPHYT_RS03365 at 758.052 kb on + strand, within BPHYT_RS03365 at 758.053 kb on - strand, within BPHYT_RS03365 at 758.251 kb on - strand, within BPHYT_RS03365 at 758.251 kb on - strand, within BPHYT_RS03365 at 758.251 kb on - strand, within BPHYT_RS03365 at 758.251 kb on - strand, within BPHYT_RS03365 at 758.251 kb on - strand, within BPHYT_RS03365 at 758.755 kb on - strand at 758.829 kb on - strand, within BPHYT_RS03370 at 758.966 kb on + strand, within BPHYT_RS03370 at 758.966 kb on + strand, within BPHYT_RS03370 at 759.090 kb on + strand, within BPHYT_RS03370 at 759.103 kb on + strand, within BPHYT_RS03370 at 759.103 kb on + strand, within BPHYT_RS03370 at 759.103 kb on + strand, within BPHYT_RS03370 at 759.367 kb on - strand, within BPHYT_RS03370 at 759.647 kb on + strand, within BPHYT_RS03370 at 759.647 kb on + strand, within BPHYT_RS03370 at 759.819 kb on + strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.820 kb on - strand at 759.891 kb on + strand, within BPHYT_RS03375 at 760.190 kb on + strand at 760.190 kb on + strand at 760.265 kb on - strand at 760.493 kb on - strand, within BPHYT_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 757,930 - +1.3 757,930 - +0.4 758,052 + BPHYT_RS03365 0.13 -2.9 758,052 + BPHYT_RS03365 0.13 -1.6 758,053 - BPHYT_RS03365 0.14 +0.4 758,251 - BPHYT_RS03365 0.55 +1.0 758,251 - BPHYT_RS03365 0.55 -0.2 758,251 - BPHYT_RS03365 0.55 +1.2 758,251 - BPHYT_RS03365 0.55 +0.0 758,251 - BPHYT_RS03365 0.55 +2.4 758,755 - +0.2 758,829 - BPHYT_RS03370 0.13 -0.9 758,966 + BPHYT_RS03370 0.25 -0.4 758,966 + BPHYT_RS03370 0.25 +1.1 759,090 + BPHYT_RS03370 0.36 -0.5 759,103 + BPHYT_RS03370 0.37 -0.7 759,103 + BPHYT_RS03370 0.37 +0.3 759,103 + BPHYT_RS03370 0.37 +0.3 759,367 - BPHYT_RS03370 0.60 +0.2 759,647 + BPHYT_RS03370 0.85 -0.2 759,647 + BPHYT_RS03370 0.85 +1.2 759,819 + -0.1 759,820 - +0.0 759,820 - -0.2 759,820 - +0.8 759,820 - +0.2 759,891 + BPHYT_RS03375 0.17 -0.1 760,190 + -1.0 760,190 + +0.4 760,265 - -0.0 760,493 - BPHYT_RS03380 0.23 -0.2
Or see this region's nucleotide sequence