Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03060 and BPHYT_RS03065 are separated by 384 nucleotides BPHYT_RS03065 and BPHYT_RS03070 are separated by 152 nucleotides BPHYT_RS03070 and BPHYT_RS03075 are separated by 104 nucleotides
BPHYT_RS03060: BPHYT_RS03060 - MFS transporter, at 682,193 to 683,512
_RS03060
BPHYT_RS03065: BPHYT_RS03065 - LuxR family transcriptional regulator, at 683,897 to 684,535
_RS03065
BPHYT_RS03070: BPHYT_RS03070 - LuxR family transcriptional regulator, at 684,688 to 685,392
_RS03070
BPHYT_RS03075: BPHYT_RS03075 - LuxR family transcriptional regulator, at 685,497 to 686,141
_RS03075
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 683.025 kb on + strand, within BPHYT_RS03060 at 683.026 kb on - strand, within BPHYT_RS03060 at 683.111 kb on + strand, within BPHYT_RS03060 at 683.111 kb on + strand, within BPHYT_RS03060 at 683.113 kb on + strand, within BPHYT_RS03060 at 683.126 kb on - strand, within BPHYT_RS03060 at 683.126 kb on - strand, within BPHYT_RS03060 at 683.126 kb on - strand, within BPHYT_RS03060 at 683.406 kb on + strand at 683.536 kb on + strand at 683.669 kb on - strand at 684.270 kb on - strand, within BPHYT_RS03065 at 684.503 kb on + strand at 684.613 kb on - strand at 684.708 kb on - strand at 684.880 kb on + strand, within BPHYT_RS03070 at 684.881 kb on - strand at 684.881 kb on - strand, within BPHYT_RS03070 at 684.881 kb on - strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.093 kb on + strand, within BPHYT_RS03070 at 685.154 kb on - strand, within BPHYT_RS03070 at 685.201 kb on + strand, within BPHYT_RS03070 at 685.202 kb on - strand, within BPHYT_RS03070 at 685.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 683,025 + BPHYT_RS03060 0.63 -0.1 683,026 - BPHYT_RS03060 0.63 -0.6 683,111 + BPHYT_RS03060 0.70 -1.5 683,111 + BPHYT_RS03060 0.70 +0.9 683,113 + BPHYT_RS03060 0.70 +0.9 683,126 - BPHYT_RS03060 0.71 +0.8 683,126 - BPHYT_RS03060 0.71 +1.3 683,126 - BPHYT_RS03060 0.71 +0.6 683,406 + -0.0 683,536 + -0.2 683,669 - -0.5 684,270 - BPHYT_RS03065 0.58 -1.6 684,503 + +0.0 684,613 - -1.9 684,708 - -0.9 684,880 + BPHYT_RS03070 0.27 +0.7 684,881 - +0.9 684,881 - BPHYT_RS03070 0.27 +0.1 684,881 - BPHYT_RS03070 0.27 -2.4 685,093 + BPHYT_RS03070 0.57 -0.0 685,093 + BPHYT_RS03070 0.57 -1.0 685,093 + BPHYT_RS03070 0.57 +0.2 685,093 + BPHYT_RS03070 0.57 +0.5 685,093 + BPHYT_RS03070 0.57 -0.2 685,093 + BPHYT_RS03070 0.57 -0.2 685,093 + BPHYT_RS03070 0.57 +0.6 685,154 - BPHYT_RS03070 0.66 -0.1 685,201 + BPHYT_RS03070 0.73 +0.6 685,202 - BPHYT_RS03070 0.73 -1.5 685,391 - +0.5
Or see this region's nucleotide sequence