Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03025 and BPHYT_RS03030 are separated by 71 nucleotides BPHYT_RS03030 and BPHYT_RS03035 overlap by 4 nucleotides
BPHYT_RS03025: BPHYT_RS03025 - methyl-accepting chemotaxis protein, at 673,714 to 675,363
_RS03025
BPHYT_RS03030: BPHYT_RS03030 - cytochrome C, at 675,435 to 676,244
_RS03030
BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866
_RS03035
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1 at 674.541 kb on + strand, within BPHYT_RS03025 at 674.596 kb on - strand at 674.842 kb on - strand, within BPHYT_RS03025 at 675.361 kb on + strand at 675.361 kb on + strand at 675.365 kb on - strand at 675.437 kb on - strand at 675.451 kb on + strand at 675.452 kb on - strand at 675.455 kb on - strand at 675.527 kb on + strand, within BPHYT_RS03030 at 675.527 kb on + strand, within BPHYT_RS03030 at 675.755 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.918 kb on + strand, within BPHYT_RS03030 at 675.919 kb on - strand, within BPHYT_RS03030 at 676.058 kb on - strand, within BPHYT_RS03030 at 676.156 kb on - strand, within BPHYT_RS03030 at 676.317 kb on + strand at 676.317 kb on + strand at 676.318 kb on - strand at 676.318 kb on - strand at 676.467 kb on + strand, within BPHYT_RS03035 at 676.472 kb on - strand, within BPHYT_RS03035 at 676.472 kb on - strand, within BPHYT_RS03035 at 676.570 kb on - strand, within BPHYT_RS03035 at 676.605 kb on + strand, within BPHYT_RS03035 at 676.731 kb on + strand, within BPHYT_RS03035 at 676.731 kb on + strand, within BPHYT_RS03035 at 676.732 kb on - strand, within BPHYT_RS03035 at 676.816 kb on - strand, within BPHYT_RS03035 at 677.178 kb on + strand, within BPHYT_RS03035 at 677.179 kb on - strand, within BPHYT_RS03035 at 677.179 kb on - strand, within BPHYT_RS03035 at 677.188 kb on + strand, within BPHYT_RS03035 at 677.188 kb on + strand, within BPHYT_RS03035 at 677.189 kb on - strand at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.190 kb on + strand, within BPHYT_RS03035 at 677.191 kb on - strand, within BPHYT_RS03035 at 677.212 kb on - strand, within BPHYT_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 674,541 + BPHYT_RS03025 0.50 +0.2 674,596 - -1.0 674,842 - BPHYT_RS03025 0.68 -0.8 675,361 + -1.5 675,361 + -0.1 675,365 - -0.5 675,437 - +0.0 675,451 + -1.2 675,452 - -0.5 675,455 - -0.2 675,527 + BPHYT_RS03030 0.11 -0.2 675,527 + BPHYT_RS03030 0.11 +1.3 675,755 - BPHYT_RS03030 0.40 -1.6 675,860 - BPHYT_RS03030 0.52 +1.0 675,860 - BPHYT_RS03030 0.52 +1.3 675,918 + BPHYT_RS03030 0.60 -0.2 675,919 - BPHYT_RS03030 0.60 -2.0 676,058 - BPHYT_RS03030 0.77 -0.6 676,156 - BPHYT_RS03030 0.89 -0.8 676,317 + +0.4 676,317 + -0.2 676,318 - +0.9 676,318 - +0.4 676,467 + BPHYT_RS03035 0.14 -0.7 676,472 - BPHYT_RS03035 0.14 -0.6 676,472 - BPHYT_RS03035 0.14 +0.1 676,570 - BPHYT_RS03035 0.20 -0.4 676,605 + BPHYT_RS03035 0.22 +0.3 676,731 + BPHYT_RS03035 0.30 -0.3 676,731 + BPHYT_RS03035 0.30 -0.1 676,732 - BPHYT_RS03035 0.30 -0.3 676,816 - BPHYT_RS03035 0.35 -0.1 677,178 + BPHYT_RS03035 0.58 -0.3 677,179 - BPHYT_RS03035 0.58 -1.1 677,179 - BPHYT_RS03035 0.58 -0.5 677,188 + BPHYT_RS03035 0.58 +0.7 677,188 + BPHYT_RS03035 0.58 -0.5 677,189 - -0.7 677,190 + BPHYT_RS03035 0.58 -0.5 677,190 + BPHYT_RS03035 0.58 +0.5 677,190 + BPHYT_RS03035 0.58 -0.0 677,190 + BPHYT_RS03035 0.58 -0.3 677,191 - BPHYT_RS03035 0.58 -0.6 677,212 - BPHYT_RS03035 0.60 -0.7
Or see this region's nucleotide sequence