Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02790 and BPHYT_RS02795 are separated by 508 nucleotides BPHYT_RS02795 and BPHYT_RS02800 are separated by 228 nucleotides BPHYT_RS02800 and BPHYT_RS02805 are separated by 25 nucleotides
BPHYT_RS02790: BPHYT_RS02790 - hypothetical protein, at 625,720 to 626,763
_RS02790
BPHYT_RS02795: BPHYT_RS02795 - glycosyl transferase, at 627,272 to 628,243
_RS02795
BPHYT_RS02800: BPHYT_RS02800 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 628,472 to 629,170
_RS02800
BPHYT_RS02805: BPHYT_RS02805 - maleylacetoacetate isomerase, at 629,196 to 629,840
_RS02805
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.381 kb on + strand, within BPHYT_RS02790 at 626.382 kb on - strand, within BPHYT_RS02790 at 626.988 kb on - strand at 627.005 kb on - strand at 627.005 kb on - strand at 627.106 kb on - strand at 627.110 kb on + strand at 627.111 kb on - strand at 627.117 kb on - strand at 627.117 kb on - strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.184 kb on + strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.185 kb on - strand at 627.189 kb on + strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.190 kb on - strand at 627.499 kb on + strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.611 kb on - strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.612 kb on + strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.613 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 627.952 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.129 kb on - strand, within BPHYT_RS02795 at 628.294 kb on + strand at 628.295 kb on - strand at 628.321 kb on + strand at 628.322 kb on - strand at 628.330 kb on + strand at 628.330 kb on + strand at 628.331 kb on - strand at 628.416 kb on + strand at 628.459 kb on - strand at 628.459 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.479 kb on - strand at 628.482 kb on + strand at 628.482 kb on + strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.483 kb on - strand at 628.553 kb on + strand, within BPHYT_RS02800 at 628.553 kb on + strand, within BPHYT_RS02800 at 628.554 kb on - strand, within BPHYT_RS02800 at 628.571 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.790 kb on + strand, within BPHYT_RS02800 at 628.791 kb on - strand, within BPHYT_RS02800 at 629.030 kb on + strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.031 kb on - strand, within BPHYT_RS02800 at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.205 kb on + strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.206 kb on - strand at 629.211 kb on + strand at 629.212 kb on - strand at 629.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 626,381 + BPHYT_RS02790 0.63 +0.1 626,381 + BPHYT_RS02790 0.63 -0.7 626,382 - BPHYT_RS02790 0.63 -0.0 626,988 - +0.2 627,005 - -1.6 627,005 - +0.2 627,106 - +0.1 627,110 + -0.3 627,111 - -0.1 627,117 - +0.5 627,117 - -0.4 627,184 + -0.2 627,184 + -2.9 627,184 + +0.1 627,184 + -0.5 627,185 - -1.0 627,185 - +0.3 627,185 - +0.0 627,189 + +0.2 627,190 - -0.7 627,190 - +0.3 627,190 - +0.4 627,499 + BPHYT_RS02795 0.23 +0.7 627,611 - BPHYT_RS02795 0.35 -0.4 627,611 - BPHYT_RS02795 0.35 +0.4 627,612 + BPHYT_RS02795 0.35 +0.8 627,612 + BPHYT_RS02795 0.35 +0.3 627,612 + BPHYT_RS02795 0.35 +0.1 627,613 - BPHYT_RS02795 0.35 +0.6 627,613 - BPHYT_RS02795 0.35 +1.3 627,613 - BPHYT_RS02795 0.35 -0.4 627,952 - BPHYT_RS02795 0.70 +1.3 627,952 - BPHYT_RS02795 0.70 +0.2 628,129 - BPHYT_RS02795 0.88 -0.3 628,129 - BPHYT_RS02795 0.88 -0.3 628,294 + -0.5 628,295 - -0.4 628,321 + +0.3 628,322 - +2.3 628,330 + +0.7 628,330 + +1.1 628,331 - -0.7 628,416 + -1.0 628,459 - -1.1 628,459 - +0.4 628,479 - -0.0 628,479 - +0.2 628,479 - -1.0 628,482 + +0.1 628,482 + -0.1 628,483 - +1.4 628,483 - -1.3 628,483 - -2.8 628,553 + BPHYT_RS02800 0.12 +1.5 628,553 + BPHYT_RS02800 0.12 +0.1 628,554 - BPHYT_RS02800 0.12 -0.4 628,571 + BPHYT_RS02800 0.14 +0.4 628,790 + BPHYT_RS02800 0.45 -1.0 628,790 + BPHYT_RS02800 0.45 +0.6 628,790 + BPHYT_RS02800 0.45 +0.3 628,791 - BPHYT_RS02800 0.46 -0.6 629,030 + BPHYT_RS02800 0.80 -2.0 629,031 - BPHYT_RS02800 0.80 -0.3 629,031 - BPHYT_RS02800 0.80 +0.3 629,031 - BPHYT_RS02800 0.80 +1.0 629,205 + +0.3 629,205 + +0.3 629,205 + -0.0 629,205 + -0.3 629,206 - +2.0 629,206 - -0.0 629,206 - -0.5 629,206 - +0.3 629,206 - +0.2 629,211 + +0.5 629,212 - -0.7 629,232 + +0.1
Or see this region's nucleotide sequence