Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35160

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35155 and BPHYT_RS35160 are separated by 69 nucleotidesBPHYT_RS35160 and BPHYT_RS35165 overlap by 4 nucleotides BPHYT_RS35155: BPHYT_RS35155 - TonB-denpendent receptor, at 3,491,074 to 3,493,272 _RS35155 BPHYT_RS35160: BPHYT_RS35160 - PKHD-type hydroxylase, at 3,493,342 to 3,494,025 _RS35160 BPHYT_RS35165: BPHYT_RS35165 - peptidase, at 3,494,022 to 3,494,744 _RS35165 Position (kb) 3493 3494 3495Strain fitness (log2 ratio) -1 0 1 2at 3492.592 kb on + strand, within BPHYT_RS35155at 3492.619 kb on + strand, within BPHYT_RS35155at 3492.620 kb on - strand, within BPHYT_RS35155at 3492.628 kb on + strand, within BPHYT_RS35155at 3492.628 kb on + strand, within BPHYT_RS35155at 3492.984 kb on + strand, within BPHYT_RS35155at 3493.007 kb on - strand, within BPHYT_RS35155at 3493.048 kb on + strand, within BPHYT_RS35155at 3493.049 kb on - strand, within BPHYT_RS35155at 3493.051 kb on - strand, within BPHYT_RS35155at 3493.099 kb on + strandat 3493.141 kb on + strandat 3493.181 kb on - strandat 3493.183 kb on + strandat 3493.186 kb on + strandat 3493.186 kb on + strandat 3493.187 kb on - strandat 3493.724 kb on - strand, within BPHYT_RS35160at 3493.990 kb on + strandat 3493.991 kb on - strandat 3494.493 kb on + strand, within BPHYT_RS35165at 3494.493 kb on + strand, within BPHYT_RS35165at 3494.512 kb on - strand, within BPHYT_RS35165at 3494.847 kb on + strandat 3495.005 kb on + strandat 3495.005 kb on + strandat 3495.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,492,592 + BPHYT_RS35155 0.69 -0.2
3,492,619 + BPHYT_RS35155 0.70 +0.7
3,492,620 - BPHYT_RS35155 0.70 +1.4
3,492,628 + BPHYT_RS35155 0.71 -0.2
3,492,628 + BPHYT_RS35155 0.71 -0.1
3,492,984 + BPHYT_RS35155 0.87 -0.4
3,493,007 - BPHYT_RS35155 0.88 +0.1
3,493,048 + BPHYT_RS35155 0.90 +2.5
3,493,049 - BPHYT_RS35155 0.90 +0.3
3,493,051 - BPHYT_RS35155 0.90 -0.2
3,493,099 + +0.4
3,493,141 + +0.2
3,493,181 - -0.5
3,493,183 + -1.4
3,493,186 + +0.3
3,493,186 + -0.0
3,493,187 - -0.2
3,493,724 - BPHYT_RS35160 0.56 +0.2
3,493,990 + -0.2
3,493,991 - +0.6
3,494,493 + BPHYT_RS35165 0.65 -0.7
3,494,493 + BPHYT_RS35165 0.65 +0.1
3,494,512 - BPHYT_RS35165 0.68 -0.4
3,494,847 + -0.0
3,495,005 + +0.1
3,495,005 + +1.2
3,495,006 - -0.4

Or see this region's nucleotide sequence