Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0579

Experiment: 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0578 and BT0579 are separated by 42 nucleotidesBT0579 and BT0580 are separated by 75 nucleotides BT0578: BT0578 - excinuclease ABC subunit A (NCBI ptt file), at 714,364 to 717,204 BT0578 BT0579: BT0579 - putative transcription regulator (NCBI ptt file), at 717,247 to 717,726 BT0579 BT0580: BT0580 - putative H+/peptide symporter (NCBI ptt file), at 717,802 to 719,316 BT0580 Position (kb) 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1at 716.256 kb on - strand, within BT0578at 716.328 kb on + strand, within BT0578at 716.329 kb on - strand, within BT0578at 716.420 kb on + strand, within BT0578at 716.425 kb on - strand, within BT0578at 716.488 kb on - strand, within BT0578at 716.804 kb on + strand, within BT0578at 716.835 kb on + strand, within BT0578at 716.838 kb on + strand, within BT0578at 716.894 kb on + strand, within BT0578at 716.985 kb on - strandat 717.000 kb on + strandat 717.001 kb on - strandat 717.001 kb on - strandat 717.003 kb on + strandat 717.046 kb on - strandat 717.074 kb on - strandat 717.081 kb on - strandat 717.116 kb on - strandat 717.127 kb on + strandat 717.169 kb on - strandat 717.206 kb on - strandat 717.216 kb on - strandat 717.228 kb on - strandat 717.230 kb on + strandat 717.390 kb on + strand, within BT0579at 717.756 kb on - strandat 717.801 kb on + strandat 717.830 kb on + strandat 717.872 kb on - strandat 717.910 kb on - strandat 717.910 kb on - strandat 717.943 kb on - strandat 717.946 kb on + strandat 717.947 kb on - strandat 717.993 kb on + strand, within BT0580at 717.994 kb on - strand, within BT0580at 718.019 kb on - strand, within BT0580at 718.029 kb on + strand, within BT0580at 718.077 kb on + strand, within BT0580at 718.105 kb on - strand, within BT0580at 718.125 kb on + strand, within BT0580at 718.125 kb on + strand, within BT0580at 718.204 kb on + strand, within BT0580at 718.220 kb on - strand, within BT0580at 718.256 kb on - strand, within BT0580at 718.257 kb on + strand, within BT0580at 718.257 kb on + strand, within BT0580at 718.307 kb on + strand, within BT0580at 718.308 kb on - strand, within BT0580at 718.308 kb on - strand, within BT0580at 718.311 kb on + strand, within BT0580at 718.312 kb on - strand, within BT0580at 718.386 kb on + strand, within BT0580at 718.405 kb on - strand, within BT0580at 718.498 kb on - strand, within BT0580at 718.524 kb on - strand, within BT0580at 718.528 kb on - strand, within BT0580at 718.632 kb on - strand, within BT0580at 718.662 kb on + strand, within BT0580at 718.662 kb on + strand, within BT0580at 718.667 kb on - strand, within BT0580at 718.667 kb on - strand, within BT0580at 718.667 kb on - strand, within BT0580at 718.667 kb on - strand, within BT0580

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours.
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716,256 - BT0578 0.67 -2.2
716,328 + BT0578 0.69 -2.4
716,329 - BT0578 0.69 -2.8
716,420 + BT0578 0.72 -3.1
716,425 - BT0578 0.73 +0.0
716,488 - BT0578 0.75 -2.6
716,804 + BT0578 0.86 -1.8
716,835 + BT0578 0.87 -1.7
716,838 + BT0578 0.87 -1.7
716,894 + BT0578 0.89 -0.7
716,985 - -0.4
717,000 + +0.6
717,001 - -2.3
717,001 - -3.1
717,003 + -0.4
717,046 - -1.2
717,074 - -1.5
717,081 - -1.6
717,116 - -1.4
717,127 + -1.3
717,169 - -1.5
717,206 - +0.3
717,216 - -0.4
717,228 - +0.6
717,230 + +1.1
717,390 + BT0579 0.30 -1.7
717,756 - +0.6
717,801 + -0.3
717,830 + +0.9
717,872 - +0.2
717,910 - -0.7
717,910 - -0.4
717,943 - -0.7
717,946 + -1.2
717,947 - +0.0
717,993 + BT0580 0.13 +1.6
717,994 - BT0580 0.13 -1.7
718,019 - BT0580 0.14 +0.0
718,029 + BT0580 0.15 -1.9
718,077 + BT0580 0.18 -0.3
718,105 - BT0580 0.20 -1.1
718,125 + BT0580 0.21 +0.6
718,125 + BT0580 0.21 -1.4
718,204 + BT0580 0.27 +0.6
718,220 - BT0580 0.28 +0.6
718,256 - BT0580 0.30 -0.6
718,257 + BT0580 0.30 +0.6
718,257 + BT0580 0.30 -2.0
718,307 + BT0580 0.33 +0.6
718,308 - BT0580 0.33 -0.8
718,308 - BT0580 0.33 +1.2
718,311 + BT0580 0.34 +1.6
718,312 - BT0580 0.34 -1.2
718,386 + BT0580 0.39 -1.2
718,405 - BT0580 0.40 -0.7
718,498 - BT0580 0.46 -1.7
718,524 - BT0580 0.48 -1.3
718,528 - BT0580 0.48 +1.6
718,632 - BT0580 0.55 -0.7
718,662 + BT0580 0.57 -0.8
718,662 + BT0580 0.57 -0.4
718,667 - BT0580 0.57 -2.5
718,667 - BT0580 0.57 -0.7
718,667 - BT0580 0.57 -1.6
718,667 - BT0580 0.57 -1.5

Or see this region's nucleotide sequence