Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0577

Experiment: 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours.

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0575 and BT0576 are separated by 127 nucleotidesBT0576 and BT0577 are separated by 7 nucleotidesBT0577 and BT0578 are separated by 142 nucleotides BT0575: BT0575 - conserved hypothetical protein (NCBI ptt file), at 711,154 to 711,597 BT0575 BT0576: BT0576 - hypothetical protein (NCBI ptt file), at 711,725 to 712,447 BT0576 BT0577: BT0577 - LysM-repeat proteins and domains (NCBI ptt file), at 712,455 to 714,221 BT0577 BT0578: BT0578 - excinuclease ABC subunit A (NCBI ptt file), at 714,364 to 717,204 BT0578 Position (kb) 712 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1at 711.632 kb on + strandat 711.632 kb on + strandat 711.637 kb on + strandat 711.637 kb on + strandat 711.763 kb on + strandat 712.047 kb on - strand, within BT0576at 712.206 kb on - strand, within BT0576at 714.331 kb on - strandat 714.399 kb on + strandat 714.406 kb on + strandat 714.676 kb on - strand, within BT0578at 714.700 kb on + strand, within BT0578at 714.743 kb on - strand, within BT0578at 714.777 kb on + strand, within BT0578at 714.778 kb on - strand, within BT0578at 714.816 kb on + strand, within BT0578at 714.917 kb on + strand, within BT0578at 714.917 kb on + strand, within BT0578at 714.923 kb on + strand, within BT0578

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.15 mM H2O2 in BHI+1x protoporphyrin, cultured for 20 hours.
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711,632 + -1.4
711,632 + -1.5
711,637 + +0.6
711,637 + +1.6
711,763 + -0.4
712,047 - BT0576 0.45 +0.2
712,206 - BT0576 0.67 +0.6
714,331 - +0.0
714,399 + -1.8
714,406 + -0.4
714,676 - BT0578 0.11 +0.6
714,700 + BT0578 0.12 +0.6
714,743 - BT0578 0.13 -2.8
714,777 + BT0578 0.15 -2.2
714,778 - BT0578 0.15 +0.4
714,816 + BT0578 0.16 -1.8
714,917 + BT0578 0.19 +0.0
714,917 + BT0578 0.19 -2.4
714,923 + BT0578 0.20 -1.2

Or see this region's nucleotide sequence