Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23560

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23555 and BWI76_RS23560 are separated by 72 nucleotidesBWI76_RS23560 and BWI76_RS23565 are separated by 35 nucleotidesBWI76_RS23565 and BWI76_RS23570 are separated by 73 nucleotides BWI76_RS23555: BWI76_RS23555 - type 1 major fimbrial subunit precursor, at 4,912,996 to 4,913,541 _RS23555 BWI76_RS23560: BWI76_RS23560 - hypothetical protein, at 4,913,614 to 4,914,153 _RS23560 BWI76_RS23565: BWI76_RS23565 - molecular chaperone FimC, at 4,914,189 to 4,914,914 _RS23565 BWI76_RS23570: BWI76_RS23570 - fimbrial protein, at 4,914,988 to 4,917,624 _RS23570 Position (kb) 4913 4914 4915Strain fitness (log2 ratio) -1 0 1at 4912.615 kb on - strandat 4912.615 kb on - strandat 4912.720 kb on + strandat 4913.046 kb on - strandat 4913.119 kb on + strand, within BWI76_RS23555at 4913.172 kb on - strand, within BWI76_RS23555at 4913.320 kb on + strand, within BWI76_RS23555at 4913.331 kb on - strand, within BWI76_RS23555at 4913.510 kb on - strandat 4913.627 kb on + strandat 4913.966 kb on + strand, within BWI76_RS23560at 4914.083 kb on + strand, within BWI76_RS23560at 4914.292 kb on + strand, within BWI76_RS23565at 4914.421 kb on + strand, within BWI76_RS23565at 4914.456 kb on - strand, within BWI76_RS23565at 4914.712 kb on + strand, within BWI76_RS23565at 4914.712 kb on + strand, within BWI76_RS23565at 4914.777 kb on - strand, within BWI76_RS23565at 4914.795 kb on - strand, within BWI76_RS23565at 4914.815 kb on - strand, within BWI76_RS23565at 4914.815 kb on - strand, within BWI76_RS23565at 4914.825 kb on - strand, within BWI76_RS23565at 4915.025 kb on - strandat 4915.112 kb on - strandat 4915.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,912,615 - -0.5
4,912,615 - -0.1
4,912,720 + +0.4
4,913,046 - -0.2
4,913,119 + BWI76_RS23555 0.23 -1.4
4,913,172 - BWI76_RS23555 0.32 +0.8
4,913,320 + BWI76_RS23555 0.59 +0.6
4,913,331 - BWI76_RS23555 0.61 -0.7
4,913,510 - +0.5
4,913,627 + -1.0
4,913,966 + BWI76_RS23560 0.65 -1.0
4,914,083 + BWI76_RS23560 0.87 -1.5
4,914,292 + BWI76_RS23565 0.14 -0.2
4,914,421 + BWI76_RS23565 0.32 +0.0
4,914,456 - BWI76_RS23565 0.37 -0.1
4,914,712 + BWI76_RS23565 0.72 +1.1
4,914,712 + BWI76_RS23565 0.72 +0.8
4,914,777 - BWI76_RS23565 0.81 +1.3
4,914,795 - BWI76_RS23565 0.83 -0.0
4,914,815 - BWI76_RS23565 0.86 +0.6
4,914,815 - BWI76_RS23565 0.86 -1.7
4,914,825 - BWI76_RS23565 0.88 -0.8
4,915,025 - +0.2
4,915,112 - -0.0
4,915,125 + -1.2

Or see this region's nucleotide sequence