Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22710

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22705 and BWI76_RS22710 are separated by 237 nucleotides BWI76_RS22705: BWI76_RS22705 - siroheme synthase, at 4,729,909 to 4,731,324 _RS22705 BWI76_RS22710: BWI76_RS22710 - Zn-dependent exopeptidase M28, at 4,731,562 to 4,732,617 _RS22710 Position (kb) 4731 4732 4733Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4730.565 kb on + strand, within BWI76_RS22705at 4730.573 kb on - strand, within BWI76_RS22705at 4730.663 kb on - strand, within BWI76_RS22705at 4730.663 kb on - strand, within BWI76_RS22705at 4730.735 kb on + strand, within BWI76_RS22705at 4730.787 kb on + strand, within BWI76_RS22705at 4730.832 kb on - strand, within BWI76_RS22705at 4731.028 kb on - strand, within BWI76_RS22705at 4731.028 kb on - strand, within BWI76_RS22705at 4731.252 kb on + strandat 4731.316 kb on + strandat 4731.316 kb on + strandat 4731.324 kb on - strandat 4731.360 kb on + strandat 4731.360 kb on + strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.373 kb on + strandat 4731.373 kb on + strandat 4731.460 kb on - strandat 4731.514 kb on + strandat 4731.514 kb on + strandat 4731.545 kb on + strandat 4731.610 kb on + strandat 4731.664 kb on + strandat 4731.672 kb on - strand, within BWI76_RS22710at 4731.681 kb on - strand, within BWI76_RS22710at 4731.765 kb on - strand, within BWI76_RS22710at 4731.791 kb on - strand, within BWI76_RS22710at 4731.804 kb on + strand, within BWI76_RS22710at 4731.804 kb on + strand, within BWI76_RS22710at 4731.813 kb on - strand, within BWI76_RS22710at 4731.819 kb on - strand, within BWI76_RS22710at 4731.844 kb on + strand, within BWI76_RS22710at 4731.912 kb on + strand, within BWI76_RS22710at 4731.915 kb on + strand, within BWI76_RS22710at 4731.920 kb on - strand, within BWI76_RS22710at 4732.432 kb on - strand, within BWI76_RS22710at 4732.596 kb on + strandat 4732.607 kb on + strandat 4732.677 kb on + strandat 4732.709 kb on + strandat 4732.712 kb on - strandat 4732.813 kb on + strandat 4732.828 kb on + strandat 4732.838 kb on - strandat 4732.867 kb on + strandat 4732.875 kb on - strandat 4732.875 kb on - strandat 4732.918 kb on - strandat 4733.005 kb on - strandat 4733.070 kb on - strandat 4733.257 kb on - strandat 4733.284 kb on + strandat 4733.310 kb on + strandat 4733.318 kb on - strandat 4733.502 kb on - strandat 4733.537 kb on - strandat 4733.553 kb on + strandat 4733.553 kb on + strandat 4733.553 kb on + strandat 4733.561 kb on - strandat 4733.561 kb on - strandat 4733.561 kb on - strandat 4733.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,730,565 + BWI76_RS22705 0.46 +0.5
4,730,573 - BWI76_RS22705 0.47 +0.1
4,730,663 - BWI76_RS22705 0.53 +0.2
4,730,663 - BWI76_RS22705 0.53 +0.3
4,730,735 + BWI76_RS22705 0.58 +0.3
4,730,787 + BWI76_RS22705 0.62 -1.0
4,730,832 - BWI76_RS22705 0.65 -0.9
4,731,028 - BWI76_RS22705 0.79 -0.4
4,731,028 - BWI76_RS22705 0.79 +0.5
4,731,252 + +0.8
4,731,316 + -0.7
4,731,316 + -0.6
4,731,324 - +0.8
4,731,360 + -0.0
4,731,360 + -0.3
4,731,368 - -0.3
4,731,368 - +0.9
4,731,368 - -0.3
4,731,368 - -1.1
4,731,373 + -0.5
4,731,373 + +0.2
4,731,460 - +0.8
4,731,514 + +0.2
4,731,514 + -1.5
4,731,545 + +0.4
4,731,610 + -1.4
4,731,664 + -1.0
4,731,672 - BWI76_RS22710 0.10 +1.2
4,731,681 - BWI76_RS22710 0.11 -0.1
4,731,765 - BWI76_RS22710 0.19 +1.2
4,731,791 - BWI76_RS22710 0.22 +0.5
4,731,804 + BWI76_RS22710 0.23 -1.5
4,731,804 + BWI76_RS22710 0.23 +0.2
4,731,813 - BWI76_RS22710 0.24 -0.4
4,731,819 - BWI76_RS22710 0.24 -0.3
4,731,844 + BWI76_RS22710 0.27 +1.3
4,731,912 + BWI76_RS22710 0.33 +2.2
4,731,915 + BWI76_RS22710 0.33 +0.4
4,731,920 - BWI76_RS22710 0.34 +0.9
4,732,432 - BWI76_RS22710 0.82 +0.3
4,732,596 + +0.2
4,732,607 + -0.5
4,732,677 + -0.9
4,732,709 + +3.8
4,732,712 - -0.1
4,732,813 + -0.2
4,732,828 + -0.1
4,732,838 - -0.0
4,732,867 + -0.4
4,732,875 - +0.6
4,732,875 - -2.4
4,732,918 - +1.6
4,733,005 - -0.8
4,733,070 - +0.8
4,733,257 - +1.4
4,733,284 + -1.2
4,733,310 + -0.7
4,733,318 - +0.3
4,733,502 - +0.5
4,733,537 - +0.8
4,733,553 + +0.3
4,733,553 + -0.7
4,733,553 + +0.1
4,733,561 - -1.0
4,733,561 - -0.5
4,733,561 - +0.6
4,733,561 - -0.7

Or see this region's nucleotide sequence