Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18855

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18850 and BWI76_RS18855 are separated by 30 nucleotidesBWI76_RS18855 and BWI76_RS18860 are separated by 14 nucleotides BWI76_RS18850: BWI76_RS18850 - iron-sulfur cluster assembly scaffold protein NifU, at 3,910,031 to 3,910,855 _RS18850 BWI76_RS18855: BWI76_RS18855 - cysteine desulfurase NifS, at 3,910,886 to 3,912,088 _RS18855 BWI76_RS18860: BWI76_RS18860 - homocitrate synthase, at 3,912,103 to 3,913,245 _RS18860 Position (kb) 3910 3911 3912 3913Strain fitness (log2 ratio) -1 0 1 2at 3910.023 kb on - strandat 3910.273 kb on + strand, within BWI76_RS18850at 3910.355 kb on - strand, within BWI76_RS18850at 3910.481 kb on + strand, within BWI76_RS18850at 3910.481 kb on + strand, within BWI76_RS18850at 3910.481 kb on + strand, within BWI76_RS18850at 3910.489 kb on - strand, within BWI76_RS18850at 3910.709 kb on + strand, within BWI76_RS18850at 3910.712 kb on - strand, within BWI76_RS18850at 3910.782 kb on + strandat 3911.309 kb on + strand, within BWI76_RS18855at 3911.517 kb on + strand, within BWI76_RS18855at 3911.567 kb on + strand, within BWI76_RS18855at 3911.838 kb on + strand, within BWI76_RS18855at 3911.867 kb on - strand, within BWI76_RS18855at 3912.030 kb on + strandat 3912.096 kb on - strandat 3912.636 kb on + strand, within BWI76_RS18860at 3912.750 kb on + strand, within BWI76_RS18860at 3912.954 kb on - strand, within BWI76_RS18860at 3913.047 kb on + strand, within BWI76_RS18860

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,910,023 - -0.1
3,910,273 + BWI76_RS18850 0.29 -0.3
3,910,355 - BWI76_RS18850 0.39 -0.7
3,910,481 + BWI76_RS18850 0.55 -0.5
3,910,481 + BWI76_RS18850 0.55 -0.7
3,910,481 + BWI76_RS18850 0.55 +0.8
3,910,489 - BWI76_RS18850 0.56 -0.6
3,910,709 + BWI76_RS18850 0.82 +0.8
3,910,712 - BWI76_RS18850 0.83 +1.2
3,910,782 + -0.0
3,911,309 + BWI76_RS18855 0.35 -0.1
3,911,517 + BWI76_RS18855 0.52 -0.1
3,911,567 + BWI76_RS18855 0.57 -0.3
3,911,838 + BWI76_RS18855 0.79 -0.3
3,911,867 - BWI76_RS18855 0.82 -1.4
3,912,030 + -1.2
3,912,096 - -0.3
3,912,636 + BWI76_RS18860 0.47 +2.6
3,912,750 + BWI76_RS18860 0.57 +0.0
3,912,954 - BWI76_RS18860 0.74 +0.1
3,913,047 + BWI76_RS18860 0.83 -0.1

Or see this region's nucleotide sequence