Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18240

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18230 and BWI76_RS18235 overlap by 26 nucleotidesBWI76_RS18235 and BWI76_RS18240 are separated by 159 nucleotidesBWI76_RS18240 and BWI76_RS18245 are separated by 14 nucleotides BWI76_RS18230: BWI76_RS18230 - trehalose-6-phosphate synthase, at 3,787,690 to 3,789,114 _RS18230 BWI76_RS18235: BWI76_RS18235 - trehalose-phosphatase, at 3,789,089 to 3,789,892 _RS18235 BWI76_RS18240: BWI76_RS18240 - L-arabinose ABC transporter permease AraH, at 3,790,052 to 3,791,032 _RS18240 BWI76_RS18245: BWI76_RS18245 - L-arabinose transporter ATP-binding protein, at 3,791,047 to 3,792,561 _RS18245 Position (kb) 3790 3791 3792Strain fitness (log2 ratio) -2 -1 0 1at 3789.109 kb on + strandat 3789.429 kb on + strand, within BWI76_RS18235at 3789.542 kb on - strand, within BWI76_RS18235at 3789.645 kb on - strand, within BWI76_RS18235at 3789.754 kb on + strand, within BWI76_RS18235at 3789.811 kb on - strand, within BWI76_RS18235at 3789.961 kb on - strandat 3790.092 kb on - strandat 3790.596 kb on + strand, within BWI76_RS18240at 3790.603 kb on - strand, within BWI76_RS18240at 3791.010 kb on - strandat 3791.276 kb on - strand, within BWI76_RS18245at 3791.276 kb on - strand, within BWI76_RS18245at 3791.298 kb on + strand, within BWI76_RS18245at 3791.303 kb on + strand, within BWI76_RS18245at 3791.306 kb on - strand, within BWI76_RS18245at 3791.387 kb on - strand, within BWI76_RS18245at 3791.438 kb on + strand, within BWI76_RS18245at 3791.446 kb on + strand, within BWI76_RS18245at 3791.555 kb on - strand, within BWI76_RS18245at 3791.555 kb on - strand, within BWI76_RS18245at 3791.567 kb on - strand, within BWI76_RS18245at 3791.684 kb on + strand, within BWI76_RS18245at 3791.909 kb on + strand, within BWI76_RS18245

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,789,109 + +0.1
3,789,429 + BWI76_RS18235 0.42 -2.2
3,789,542 - BWI76_RS18235 0.56 +0.3
3,789,645 - BWI76_RS18235 0.69 +0.3
3,789,754 + BWI76_RS18235 0.83 +1.0
3,789,811 - BWI76_RS18235 0.90 -0.1
3,789,961 - +0.9
3,790,092 - +0.1
3,790,596 + BWI76_RS18240 0.55 -0.9
3,790,603 - BWI76_RS18240 0.56 -1.6
3,791,010 - -0.8
3,791,276 - BWI76_RS18245 0.15 -0.2
3,791,276 - BWI76_RS18245 0.15 -0.2
3,791,298 + BWI76_RS18245 0.17 -0.1
3,791,303 + BWI76_RS18245 0.17 +1.7
3,791,306 - BWI76_RS18245 0.17 -0.2
3,791,387 - BWI76_RS18245 0.22 -1.5
3,791,438 + BWI76_RS18245 0.26 -0.7
3,791,446 + BWI76_RS18245 0.26 -0.2
3,791,555 - BWI76_RS18245 0.34 +0.5
3,791,555 - BWI76_RS18245 0.34 -0.4
3,791,567 - BWI76_RS18245 0.34 +0.2
3,791,684 + BWI76_RS18245 0.42 -0.1
3,791,909 + BWI76_RS18245 0.57 +0.8

Or see this region's nucleotide sequence