Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18040

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18030 and BWI76_RS18035 are separated by 18 nucleotidesBWI76_RS18035 and BWI76_RS18040 are separated by 2 nucleotidesBWI76_RS18040 and BWI76_RS18045 are separated by 14 nucleotides BWI76_RS18030: BWI76_RS18030 - spore coat protein U, at 3,746,728 to 3,747,246 _RS18030 BWI76_RS18035: BWI76_RS18035 - fimbrial chaperone, at 3,747,265 to 3,748,029 _RS18035 BWI76_RS18040: BWI76_RS18040 - fimbrial assembly protein, at 3,748,032 to 3,750,362 _RS18040 BWI76_RS18045: BWI76_RS18045 - spore coat U domain-containing protein, at 3,750,377 to 3,751,336 _RS18045 Position (kb) 3748 3749 3750 3751Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3747.048 kb on + strand, within BWI76_RS18030at 3747.161 kb on - strand, within BWI76_RS18030at 3747.163 kb on - strand, within BWI76_RS18030at 3747.240 kb on - strandat 3747.383 kb on + strand, within BWI76_RS18035at 3747.643 kb on + strand, within BWI76_RS18035at 3747.677 kb on + strand, within BWI76_RS18035at 3747.829 kb on + strand, within BWI76_RS18035at 3747.834 kb on + strand, within BWI76_RS18035at 3747.847 kb on - strand, within BWI76_RS18035at 3748.082 kb on + strandat 3748.318 kb on - strand, within BWI76_RS18040at 3748.633 kb on + strand, within BWI76_RS18040at 3748.682 kb on - strand, within BWI76_RS18040at 3748.689 kb on + strand, within BWI76_RS18040at 3748.702 kb on - strand, within BWI76_RS18040at 3748.858 kb on - strand, within BWI76_RS18040at 3748.872 kb on - strand, within BWI76_RS18040at 3748.874 kb on + strand, within BWI76_RS18040at 3748.877 kb on - strand, within BWI76_RS18040at 3748.978 kb on - strand, within BWI76_RS18040at 3749.107 kb on + strand, within BWI76_RS18040at 3749.593 kb on + strand, within BWI76_RS18040at 3749.601 kb on - strand, within BWI76_RS18040at 3749.694 kb on - strand, within BWI76_RS18040at 3750.140 kb on - strandat 3750.269 kb on - strandat 3750.397 kb on - strandat 3750.406 kb on + strandat 3750.457 kb on + strandat 3750.494 kb on + strand, within BWI76_RS18045at 3750.509 kb on + strand, within BWI76_RS18045at 3750.655 kb on + strand, within BWI76_RS18045at 3750.690 kb on - strand, within BWI76_RS18045at 3750.719 kb on - strand, within BWI76_RS18045at 3750.726 kb on + strand, within BWI76_RS18045at 3750.734 kb on - strand, within BWI76_RS18045at 3750.920 kb on + strand, within BWI76_RS18045at 3750.928 kb on - strand, within BWI76_RS18045at 3751.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,747,048 + BWI76_RS18030 0.62 +0.4
3,747,161 - BWI76_RS18030 0.83 -0.3
3,747,163 - BWI76_RS18030 0.84 -0.8
3,747,240 - +0.0
3,747,383 + BWI76_RS18035 0.15 +0.3
3,747,643 + BWI76_RS18035 0.49 +0.6
3,747,677 + BWI76_RS18035 0.54 -0.7
3,747,829 + BWI76_RS18035 0.74 +0.2
3,747,834 + BWI76_RS18035 0.74 -0.1
3,747,847 - BWI76_RS18035 0.76 +0.1
3,748,082 + -1.4
3,748,318 - BWI76_RS18040 0.12 -0.7
3,748,633 + BWI76_RS18040 0.26 +0.8
3,748,682 - BWI76_RS18040 0.28 -0.9
3,748,689 + BWI76_RS18040 0.28 -0.2
3,748,702 - BWI76_RS18040 0.29 +0.7
3,748,858 - BWI76_RS18040 0.35 -0.4
3,748,872 - BWI76_RS18040 0.36 +0.6
3,748,874 + BWI76_RS18040 0.36 +0.7
3,748,877 - BWI76_RS18040 0.36 -0.9
3,748,978 - BWI76_RS18040 0.41 -0.0
3,749,107 + BWI76_RS18040 0.46 +4.6
3,749,593 + BWI76_RS18040 0.67 -0.0
3,749,601 - BWI76_RS18040 0.67 +1.4
3,749,694 - BWI76_RS18040 0.71 +0.3
3,750,140 - -0.7
3,750,269 - -0.2
3,750,397 - +0.3
3,750,406 + +0.1
3,750,457 + +1.0
3,750,494 + BWI76_RS18045 0.12 -0.4
3,750,509 + BWI76_RS18045 0.14 +0.3
3,750,655 + BWI76_RS18045 0.29 -1.0
3,750,690 - BWI76_RS18045 0.33 -2.0
3,750,719 - BWI76_RS18045 0.36 +0.4
3,750,726 + BWI76_RS18045 0.36 -1.4
3,750,734 - BWI76_RS18045 0.37 +0.2
3,750,920 + BWI76_RS18045 0.57 +0.9
3,750,928 - BWI76_RS18045 0.57 +0.4
3,751,332 + -0.7

Or see this region's nucleotide sequence