Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17685

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17680 and BWI76_RS17685 are separated by 294 nucleotidesBWI76_RS17685 and BWI76_RS17690 are separated by 83 nucleotides BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434 _RS17680 BWI76_RS17685: BWI76_RS17685 - beta-glucosidase, at 3,673,729 to 3,676,509 _RS17685 BWI76_RS17690: BWI76_RS17690 - putative glycoporin, at 3,676,593 to 3,677,984 _RS17690 Position (kb) 3673 3674 3675 3676 3677Strain fitness (log2 ratio) -1 0 1 2 3at 3672.745 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.848 kb on + strand, within BWI76_RS17680at 3672.856 kb on - strand, within BWI76_RS17680at 3673.262 kb on - strand, within BWI76_RS17680at 3673.508 kb on - strandat 3673.531 kb on - strandat 3673.655 kb on - strandat 3673.679 kb on - strandat 3673.985 kb on - strandat 3674.050 kb on - strand, within BWI76_RS17685at 3674.050 kb on - strand, within BWI76_RS17685at 3674.100 kb on + strand, within BWI76_RS17685at 3674.166 kb on + strand, within BWI76_RS17685at 3674.217 kb on - strand, within BWI76_RS17685at 3674.374 kb on + strand, within BWI76_RS17685at 3674.391 kb on + strand, within BWI76_RS17685at 3674.442 kb on + strand, within BWI76_RS17685at 3674.498 kb on - strand, within BWI76_RS17685at 3675.052 kb on + strand, within BWI76_RS17685at 3675.052 kb on + strand, within BWI76_RS17685at 3675.080 kb on - strand, within BWI76_RS17685at 3675.254 kb on - strand, within BWI76_RS17685at 3675.459 kb on - strand, within BWI76_RS17685at 3675.560 kb on - strand, within BWI76_RS17685at 3675.627 kb on - strand, within BWI76_RS17685at 3675.839 kb on + strand, within BWI76_RS17685at 3675.893 kb on + strand, within BWI76_RS17685at 3675.893 kb on + strand, within BWI76_RS17685at 3676.066 kb on + strand, within BWI76_RS17685at 3676.066 kb on + strand, within BWI76_RS17685at 3676.254 kb on + strandat 3676.397 kb on - strandat 3676.867 kb on - strand, within BWI76_RS17690at 3676.945 kb on - strand, within BWI76_RS17690at 3677.022 kb on - strand, within BWI76_RS17690at 3677.196 kb on - strand, within BWI76_RS17690at 3677.241 kb on - strand, within BWI76_RS17690at 3677.390 kb on - strand, within BWI76_RS17690at 3677.412 kb on - strand, within BWI76_RS17690at 3677.457 kb on - strand, within BWI76_RS17690

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
3,672,745 + BWI76_RS17680 0.52 +0.1
3,672,843 + BWI76_RS17680 0.59 -0.4
3,672,843 + BWI76_RS17680 0.59 +1.3
3,672,848 + BWI76_RS17680 0.59 +2.8
3,672,856 - BWI76_RS17680 0.60 -1.2
3,673,262 - BWI76_RS17680 0.88 -0.1
3,673,508 - -0.8
3,673,531 - -1.3
3,673,655 - -0.3
3,673,679 - -0.3
3,673,985 - +0.3
3,674,050 - BWI76_RS17685 0.12 +0.4
3,674,050 - BWI76_RS17685 0.12 -1.5
3,674,100 + BWI76_RS17685 0.13 -0.9
3,674,166 + BWI76_RS17685 0.16 -0.6
3,674,217 - BWI76_RS17685 0.18 +0.2
3,674,374 + BWI76_RS17685 0.23 -0.3
3,674,391 + BWI76_RS17685 0.24 -0.9
3,674,442 + BWI76_RS17685 0.26 +1.6
3,674,498 - BWI76_RS17685 0.28 +0.1
3,675,052 + BWI76_RS17685 0.48 +0.1
3,675,052 + BWI76_RS17685 0.48 +2.7
3,675,080 - BWI76_RS17685 0.49 +2.7
3,675,254 - BWI76_RS17685 0.55 +0.1
3,675,459 - BWI76_RS17685 0.62 +0.1
3,675,560 - BWI76_RS17685 0.66 -0.0
3,675,627 - BWI76_RS17685 0.68 +0.1
3,675,839 + BWI76_RS17685 0.76 -0.8
3,675,893 + BWI76_RS17685 0.78 +0.0
3,675,893 + BWI76_RS17685 0.78 +2.1
3,676,066 + BWI76_RS17685 0.84 +0.1
3,676,066 + BWI76_RS17685 0.84 +0.2
3,676,254 + +0.2
3,676,397 - +0.9
3,676,867 - BWI76_RS17690 0.20 -0.1
3,676,945 - BWI76_RS17690 0.25 +0.2
3,677,022 - BWI76_RS17690 0.31 +0.7
3,677,196 - BWI76_RS17690 0.43 -0.2
3,677,241 - BWI76_RS17690 0.47 +0.3
3,677,390 - BWI76_RS17690 0.57 -0.8
3,677,412 - BWI76_RS17690 0.59 +1.8
3,677,457 - BWI76_RS17690 0.62 -0.1

Or see this region's nucleotide sequence