Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12725 and BWI76_RS12730 are separated by 355 nucleotides BWI76_RS12730 and BWI76_RS12735 are separated by 623 nucleotides
BWI76_RS12725: BWI76_RS12725 - outer membrane pore protein N, non-specific, at 2,651,654 to 2,652,802
_RS12725
BWI76_RS12730: BWI76_RS12730 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,653,158 to 2,656,685
_RS12730
BWI76_RS12735: BWI76_RS12735 - phage repressor protein, at 2,657,309 to 2,657,845
_RS12735
Position (kb)
2653
2654
2655
2656
2657 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.159 kb on + strand, within BWI76_RS12725 at 2652.160 kb on - strand, within BWI76_RS12725 at 2652.160 kb on - strand, within BWI76_RS12725 at 2652.163 kb on + strand, within BWI76_RS12725 at 2652.167 kb on - strand, within BWI76_RS12725 at 2652.177 kb on + strand, within BWI76_RS12725 at 2652.177 kb on + strand, within BWI76_RS12725 at 2652.182 kb on + strand, within BWI76_RS12725 at 2652.187 kb on + strand, within BWI76_RS12725 at 2652.209 kb on + strand, within BWI76_RS12725 at 2652.309 kb on + strand, within BWI76_RS12725 at 2652.309 kb on + strand, within BWI76_RS12725 at 2652.354 kb on + strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.377 kb on - strand, within BWI76_RS12725 at 2652.396 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.398 kb on - strand, within BWI76_RS12725 at 2652.433 kb on - strand, within BWI76_RS12725 at 2652.440 kb on + strand, within BWI76_RS12725 at 2652.451 kb on - strand at 2652.518 kb on + strand, within BWI76_RS12725 at 2652.518 kb on + strand at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.519 kb on + strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.527 kb on - strand, within BWI76_RS12725 at 2652.577 kb on + strand, within BWI76_RS12725 at 2652.577 kb on + strand, within BWI76_RS12725 at 2652.631 kb on - strand, within BWI76_RS12725 at 2653.024 kb on + strand at 2653.148 kb on - strand at 2653.161 kb on + strand at 2653.209 kb on - strand at 2653.217 kb on - strand at 2653.217 kb on - strand at 2653.243 kb on + strand at 2653.251 kb on - strand at 2653.251 kb on - strand at 2653.251 kb on - strand at 2653.253 kb on + strand at 2653.261 kb on + strand at 2653.310 kb on - strand at 2653.924 kb on - strand, within BWI76_RS12730 at 2654.179 kb on + strand, within BWI76_RS12730 at 2654.179 kb on + strand, within BWI76_RS12730 at 2654.187 kb on - strand, within BWI76_RS12730 at 2654.187 kb on - strand, within BWI76_RS12730 at 2655.005 kb on - strand, within BWI76_RS12730 at 2655.007 kb on + strand at 2655.026 kb on + strand, within BWI76_RS12730 at 2655.138 kb on + strand, within BWI76_RS12730 at 2655.195 kb on - strand, within BWI76_RS12730 at 2655.284 kb on + strand, within BWI76_RS12730 at 2655.759 kb on - strand, within BWI76_RS12730 at 2655.830 kb on - strand, within BWI76_RS12730 at 2656.127 kb on + strand, within BWI76_RS12730 at 2656.209 kb on + strand, within BWI76_RS12730 at 2656.217 kb on + strand, within BWI76_RS12730 at 2656.217 kb on - strand, within BWI76_RS12730 at 2656.757 kb on + strand at 2656.761 kb on - strand at 2656.952 kb on + strand at 2657.221 kb on + strand at 2657.268 kb on + strand at 2657.276 kb on - strand at 2657.441 kb on + strand, within BWI76_RS12735
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,652,159 + BWI76_RS12725 0.44 -0.3 2,652,159 + BWI76_RS12725 0.44 +1.3 2,652,159 + BWI76_RS12725 0.44 +1.2 2,652,160 - BWI76_RS12725 0.44 +0.0 2,652,160 - BWI76_RS12725 0.44 -0.6 2,652,163 + BWI76_RS12725 0.44 -1.7 2,652,167 - BWI76_RS12725 0.45 +0.3 2,652,177 + BWI76_RS12725 0.46 +0.5 2,652,177 + BWI76_RS12725 0.46 +0.7 2,652,182 + BWI76_RS12725 0.46 +0.6 2,652,187 + BWI76_RS12725 0.46 +0.7 2,652,209 + BWI76_RS12725 0.48 -0.7 2,652,309 + BWI76_RS12725 0.57 +1.0 2,652,309 + BWI76_RS12725 0.57 +0.3 2,652,354 + BWI76_RS12725 0.61 +0.1 2,652,377 - BWI76_RS12725 0.63 +0.1 2,652,377 - BWI76_RS12725 0.63 +0.3 2,652,377 - BWI76_RS12725 0.63 -1.1 2,652,377 - BWI76_RS12725 0.63 -0.4 2,652,396 - BWI76_RS12725 0.65 -0.7 2,652,398 - BWI76_RS12725 0.65 -0.8 2,652,398 - BWI76_RS12725 0.65 +0.6 2,652,398 - BWI76_RS12725 0.65 -1.4 2,652,398 - BWI76_RS12725 0.65 -0.9 2,652,433 - BWI76_RS12725 0.68 -0.3 2,652,440 + BWI76_RS12725 0.68 +0.7 2,652,451 - +2.7 2,652,518 + BWI76_RS12725 0.75 +1.9 2,652,518 + -0.6 2,652,519 + BWI76_RS12725 0.75 +0.7 2,652,519 + BWI76_RS12725 0.75 -1.1 2,652,519 + BWI76_RS12725 0.75 +0.3 2,652,527 - BWI76_RS12725 0.76 -0.3 2,652,527 - BWI76_RS12725 0.76 +0.0 2,652,527 - BWI76_RS12725 0.76 +2.5 2,652,527 - BWI76_RS12725 0.76 -1.1 2,652,577 + BWI76_RS12725 0.80 -0.3 2,652,577 + BWI76_RS12725 0.80 +0.0 2,652,631 - BWI76_RS12725 0.85 +0.9 2,653,024 + +0.3 2,653,148 - +1.0 2,653,161 + -0.0 2,653,209 - +2.8 2,653,217 - -0.2 2,653,217 - -0.1 2,653,243 + -0.7 2,653,251 - +1.1 2,653,251 - +0.9 2,653,251 - -0.3 2,653,253 + +2.0 2,653,261 + -0.4 2,653,310 - -1.2 2,653,924 - BWI76_RS12730 0.22 -1.7 2,654,179 + BWI76_RS12730 0.29 -0.2 2,654,179 + BWI76_RS12730 0.29 +1.6 2,654,187 - BWI76_RS12730 0.29 -0.4 2,654,187 - BWI76_RS12730 0.29 -0.1 2,655,005 - BWI76_RS12730 0.52 +5.0 2,655,007 + +0.9 2,655,026 + BWI76_RS12730 0.53 -0.8 2,655,138 + BWI76_RS12730 0.56 -0.3 2,655,195 - BWI76_RS12730 0.58 +8.0 2,655,284 + BWI76_RS12730 0.60 +3.8 2,655,759 - BWI76_RS12730 0.74 +0.2 2,655,830 - BWI76_RS12730 0.76 +0.2 2,656,127 + BWI76_RS12730 0.84 +3.2 2,656,209 + BWI76_RS12730 0.86 +0.3 2,656,217 + BWI76_RS12730 0.87 -0.1 2,656,217 - BWI76_RS12730 0.87 +3.6 2,656,757 + -0.7 2,656,761 - -0.1 2,656,952 + -0.1 2,657,221 + +2.3 2,657,268 + -1.1 2,657,276 - +1.0 2,657,441 + BWI76_RS12735 0.25 -0.1
Or see this region's nucleotide sequence