Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11555

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11545 and BWI76_RS11550 are separated by 24 nucleotidesBWI76_RS11550 and BWI76_RS11555 are separated by 4 nucleotidesBWI76_RS11555 and BWI76_RS11560 are separated by 9 nucleotides BWI76_RS11545: BWI76_RS11545 - NAD(P)-dependent alcohol dehydrogenase, at 2,429,132 to 2,430,175 _RS11545 BWI76_RS11550: BWI76_RS11550 - hypothetical protein, at 2,430,200 to 2,431,036 _RS11550 BWI76_RS11555: BWI76_RS11555 - kinase, at 2,431,041 to 2,431,988 _RS11555 BWI76_RS11560: BWI76_RS11560 - oxidoreductase, at 2,431,998 to 2,432,981 _RS11560 Position (kb) 2431 2432Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2430.101 kb on + strandat 2430.145 kb on + strandat 2430.145 kb on + strandat 2430.169 kb on + strandat 2430.195 kb on - strandat 2430.261 kb on + strandat 2430.262 kb on + strandat 2430.269 kb on - strandat 2430.269 kb on - strandat 2430.293 kb on + strand, within BWI76_RS11550at 2430.308 kb on + strand, within BWI76_RS11550at 2430.323 kb on - strand, within BWI76_RS11550at 2430.453 kb on + strand, within BWI76_RS11550at 2430.453 kb on + strand, within BWI76_RS11550at 2430.458 kb on + strand, within BWI76_RS11550at 2430.480 kb on - strand, within BWI76_RS11550at 2430.480 kb on - strand, within BWI76_RS11550at 2430.591 kb on + strand, within BWI76_RS11550at 2430.591 kb on + strand, within BWI76_RS11550at 2430.596 kb on + strand, within BWI76_RS11550at 2430.599 kb on - strand, within BWI76_RS11550at 2430.737 kb on + strand, within BWI76_RS11550at 2430.780 kb on - strand, within BWI76_RS11550at 2430.901 kb on - strand, within BWI76_RS11550at 2430.920 kb on + strand, within BWI76_RS11550at 2430.943 kb on + strand, within BWI76_RS11550at 2430.977 kb on + strandat 2431.009 kb on + strandat 2431.009 kb on + strandat 2431.043 kb on + strandat 2431.051 kb on - strandat 2431.144 kb on + strand, within BWI76_RS11555at 2431.154 kb on + strand, within BWI76_RS11555at 2431.156 kb on + strand, within BWI76_RS11555at 2431.164 kb on - strand, within BWI76_RS11555at 2431.164 kb on - strand, within BWI76_RS11555at 2431.164 kb on - strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.215 kb on + strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.223 kb on - strand, within BWI76_RS11555at 2431.241 kb on - strand, within BWI76_RS11555at 2431.268 kb on + strand, within BWI76_RS11555at 2431.270 kb on + strandat 2431.333 kb on + strand, within BWI76_RS11555at 2431.338 kb on + strand, within BWI76_RS11555at 2431.338 kb on + strand, within BWI76_RS11555at 2431.338 kb on + strand, within BWI76_RS11555at 2431.338 kb on + strand, within BWI76_RS11555at 2431.346 kb on - strand, within BWI76_RS11555at 2431.346 kb on - strand, within BWI76_RS11555at 2431.347 kb on - strand, within BWI76_RS11555at 2431.392 kb on - strand, within BWI76_RS11555at 2431.447 kb on - strand, within BWI76_RS11555at 2431.447 kb on - strand, within BWI76_RS11555at 2431.488 kb on + strand, within BWI76_RS11555at 2431.518 kb on + strand, within BWI76_RS11555at 2431.530 kb on + strand, within BWI76_RS11555at 2431.538 kb on + strand, within BWI76_RS11555at 2431.584 kb on - strand, within BWI76_RS11555at 2431.584 kb on - strand, within BWI76_RS11555at 2431.591 kb on - strand, within BWI76_RS11555at 2431.601 kb on + strand, within BWI76_RS11555at 2431.672 kb on + strand, within BWI76_RS11555at 2431.763 kb on - strand, within BWI76_RS11555at 2431.850 kb on + strand, within BWI76_RS11555at 2431.850 kb on + strand, within BWI76_RS11555at 2431.858 kb on - strand, within BWI76_RS11555at 2431.858 kb on - strand, within BWI76_RS11555at 2431.900 kb on - strandat 2431.983 kb on + strandat 2432.005 kb on - strandat 2432.079 kb on + strandat 2432.156 kb on - strandat 2432.285 kb on + strand, within BWI76_RS11560at 2432.368 kb on + strand, within BWI76_RS11560at 2432.535 kb on + strand, within BWI76_RS11560at 2432.596 kb on + strand, within BWI76_RS11560at 2432.614 kb on + strand, within BWI76_RS11560at 2432.659 kb on + strand, within BWI76_RS11560at 2432.667 kb on - strand, within BWI76_RS11560at 2432.864 kb on - strand, within BWI76_RS11560at 2432.974 kb on + strandat 2432.974 kb on - strandat 2432.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,430,101 + -0.9
2,430,145 + +1.4
2,430,145 + +0.4
2,430,169 + +0.6
2,430,195 - -1.6
2,430,261 + +0.1
2,430,262 + +0.0
2,430,269 - +0.2
2,430,269 - -0.3
2,430,293 + BWI76_RS11550 0.11 +0.5
2,430,308 + BWI76_RS11550 0.13 +0.3
2,430,323 - BWI76_RS11550 0.15 +0.9
2,430,453 + BWI76_RS11550 0.30 +0.6
2,430,453 + BWI76_RS11550 0.30 +1.3
2,430,458 + BWI76_RS11550 0.31 +1.1
2,430,480 - BWI76_RS11550 0.33 +7.5
2,430,480 - BWI76_RS11550 0.33 +0.4
2,430,591 + BWI76_RS11550 0.47 +0.4
2,430,591 + BWI76_RS11550 0.47 +1.0
2,430,596 + BWI76_RS11550 0.47 -0.4
2,430,599 - BWI76_RS11550 0.48 -0.7
2,430,737 + BWI76_RS11550 0.64 +0.2
2,430,780 - BWI76_RS11550 0.69 +1.3
2,430,901 - BWI76_RS11550 0.84 +0.1
2,430,920 + BWI76_RS11550 0.86 +0.0
2,430,943 + BWI76_RS11550 0.89 -1.4
2,430,977 + +0.2
2,431,009 + +2.2
2,431,009 + +1.0
2,431,043 + -0.6
2,431,051 - -0.1
2,431,144 + BWI76_RS11555 0.11 +0.4
2,431,154 + BWI76_RS11555 0.12 +0.8
2,431,156 + BWI76_RS11555 0.12 +0.4
2,431,164 - BWI76_RS11555 0.13 +1.4
2,431,164 - BWI76_RS11555 0.13 -0.4
2,431,164 - BWI76_RS11555 0.13 -0.1
2,431,215 + BWI76_RS11555 0.18 +0.0
2,431,215 + BWI76_RS11555 0.18 +1.5
2,431,215 + BWI76_RS11555 0.18 -1.1
2,431,215 + BWI76_RS11555 0.18 +0.7
2,431,215 + BWI76_RS11555 0.18 +0.2
2,431,215 + BWI76_RS11555 0.18 -0.6
2,431,215 + BWI76_RS11555 0.18 +0.2
2,431,215 + BWI76_RS11555 0.18 +0.5
2,431,215 + BWI76_RS11555 0.18 +0.1
2,431,223 - BWI76_RS11555 0.19 +0.5
2,431,223 - BWI76_RS11555 0.19 +0.8
2,431,223 - BWI76_RS11555 0.19 +0.6
2,431,223 - BWI76_RS11555 0.19 +0.1
2,431,223 - BWI76_RS11555 0.19 -0.4
2,431,223 - BWI76_RS11555 0.19 -0.6
2,431,223 - BWI76_RS11555 0.19 -0.2
2,431,241 - BWI76_RS11555 0.21 -0.6
2,431,268 + BWI76_RS11555 0.24 +1.2
2,431,270 + -0.2
2,431,333 + BWI76_RS11555 0.31 +0.4
2,431,338 + BWI76_RS11555 0.31 +0.2
2,431,338 + BWI76_RS11555 0.31 -1.2
2,431,338 + BWI76_RS11555 0.31 +0.2
2,431,338 + BWI76_RS11555 0.31 +4.3
2,431,346 - BWI76_RS11555 0.32 +0.8
2,431,346 - BWI76_RS11555 0.32 -0.4
2,431,347 - BWI76_RS11555 0.32 +1.9
2,431,392 - BWI76_RS11555 0.37 -0.4
2,431,447 - BWI76_RS11555 0.43 -0.5
2,431,447 - BWI76_RS11555 0.43 +1.6
2,431,488 + BWI76_RS11555 0.47 +0.1
2,431,518 + BWI76_RS11555 0.50 +0.8
2,431,530 + BWI76_RS11555 0.52 -1.0
2,431,538 + BWI76_RS11555 0.52 -0.5
2,431,584 - BWI76_RS11555 0.57 +1.3
2,431,584 - BWI76_RS11555 0.57 -0.1
2,431,591 - BWI76_RS11555 0.58 +0.9
2,431,601 + BWI76_RS11555 0.59 +2.7
2,431,672 + BWI76_RS11555 0.67 -0.6
2,431,763 - BWI76_RS11555 0.76 +0.5
2,431,850 + BWI76_RS11555 0.85 -1.4
2,431,850 + BWI76_RS11555 0.85 -0.2
2,431,858 - BWI76_RS11555 0.86 -0.2
2,431,858 - BWI76_RS11555 0.86 -0.1
2,431,900 - -1.0
2,431,983 + -0.2
2,432,005 - -1.2
2,432,079 + -2.2
2,432,156 - +0.8
2,432,285 + BWI76_RS11560 0.29 -0.9
2,432,368 + BWI76_RS11560 0.38 +0.8
2,432,535 + BWI76_RS11560 0.55 -0.5
2,432,596 + BWI76_RS11560 0.61 -1.8
2,432,614 + BWI76_RS11560 0.63 +1.1
2,432,659 + BWI76_RS11560 0.67 -0.3
2,432,667 - BWI76_RS11560 0.68 -1.4
2,432,864 - BWI76_RS11560 0.88 -0.6
2,432,974 + -0.1
2,432,974 - +0.3
2,432,985 + +0.1

Or see this region's nucleotide sequence