Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10605 and BWI76_RS10610 are separated by 693 nucleotides BWI76_RS10610 and BWI76_RS10615 are separated by 182 nucleotides BWI76_RS10615 and BWI76_RS10620 are separated by 130 nucleotides
BWI76_RS10605: BWI76_RS10605 - oligogalacturonate porin, at 2,240,055 to 2,240,756
_RS10605
BWI76_RS10610: BWI76_RS10610 - helix-turn-helix transcriptional regulator, at 2,241,450 to 2,241,998
_RS10610
BWI76_RS10615: BWI76_RS10615 - chorismate mutase, at 2,242,181 to 2,242,477
_RS10615
BWI76_RS10620: BWI76_RS10620 - hypothetical protein, at 2,242,608 to 2,243,672
_RS10620
Position (kb)
2241
2242 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2240.462 kb on + strand, within BWI76_RS10605 at 2240.462 kb on + strand, within BWI76_RS10605 at 2240.467 kb on - strand, within BWI76_RS10605 at 2240.470 kb on - strand, within BWI76_RS10605 at 2240.471 kb on + strand, within BWI76_RS10605 at 2240.471 kb on + strand, within BWI76_RS10605 at 2240.471 kb on + strand, within BWI76_RS10605 at 2240.479 kb on - strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.525 kb on + strand, within BWI76_RS10605 at 2240.533 kb on - strand, within BWI76_RS10605 at 2240.578 kb on + strand, within BWI76_RS10605 at 2240.603 kb on + strand at 2240.603 kb on + strand, within BWI76_RS10605 at 2240.611 kb on + strand, within BWI76_RS10605 at 2240.637 kb on - strand, within BWI76_RS10605 at 2240.639 kb on - strand, within BWI76_RS10605 at 2240.643 kb on + strand, within BWI76_RS10605 at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.687 kb on + strand at 2240.695 kb on + strand at 2240.716 kb on - strand at 2240.813 kb on - strand at 2240.813 kb on - strand at 2240.817 kb on - strand at 2240.846 kb on + strand at 2240.846 kb on + strand at 2240.856 kb on + strand at 2240.856 kb on + strand at 2240.857 kb on - strand at 2240.872 kb on - strand at 2240.895 kb on - strand at 2240.918 kb on + strand at 2240.924 kb on + strand at 2240.938 kb on - strand at 2240.938 kb on - strand at 2240.951 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.953 kb on + strand at 2240.961 kb on - strand at 2240.961 kb on - strand at 2240.961 kb on - strand at 2240.981 kb on - strand at 2240.997 kb on + strand at 2241.296 kb on + strand at 2241.314 kb on + strand at 2241.323 kb on + strand at 2241.331 kb on - strand at 2241.331 kb on - strand at 2241.353 kb on + strand at 2241.373 kb on - strand at 2241.379 kb on + strand at 2241.402 kb on + strand at 2241.435 kb on + strand at 2241.435 kb on + strand at 2241.525 kb on + strand at 2241.525 kb on + strand, within BWI76_RS10610 at 2241.525 kb on + strand, within BWI76_RS10610 at 2241.531 kb on + strand, within BWI76_RS10610 at 2241.531 kb on + strand, within BWI76_RS10610 at 2241.531 kb on + strand, within BWI76_RS10610 at 2241.578 kb on + strand, within BWI76_RS10610 at 2241.586 kb on - strand, within BWI76_RS10610 at 2241.611 kb on + strand, within BWI76_RS10610 at 2241.616 kb on + strand, within BWI76_RS10610 at 2241.725 kb on + strand, within BWI76_RS10610 at 2241.892 kb on + strand, within BWI76_RS10610 at 2242.116 kb on + strand at 2242.214 kb on - strand, within BWI76_RS10615 at 2242.302 kb on + strand, within BWI76_RS10615 at 2242.308 kb on - strand, within BWI76_RS10615 at 2242.408 kb on + strand, within BWI76_RS10615 at 2242.408 kb on - strand, within BWI76_RS10615 at 2242.422 kb on + strand at 2242.422 kb on + strand, within BWI76_RS10615 at 2242.430 kb on - strand, within BWI76_RS10615 at 2242.452 kb on + strand at 2242.545 kb on + strand at 2242.567 kb on - strand at 2242.662 kb on + strand at 2242.707 kb on + strand at 2242.760 kb on + strand, within BWI76_RS10620 at 2242.796 kb on + strand, within BWI76_RS10620 at 2242.888 kb on + strand, within BWI76_RS10620 at 2242.922 kb on - strand, within BWI76_RS10620 at 2242.938 kb on + strand, within BWI76_RS10620 at 2242.943 kb on + strand, within BWI76_RS10620 at 2242.949 kb on - strand, within BWI76_RS10620 at 2242.951 kb on - strand, within BWI76_RS10620
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,240,462 + BWI76_RS10605 0.58 -0.5 2,240,462 + BWI76_RS10605 0.58 -1.9 2,240,467 - BWI76_RS10605 0.59 -0.6 2,240,470 - BWI76_RS10605 0.59 -0.5 2,240,471 + BWI76_RS10605 0.59 +1.0 2,240,471 + BWI76_RS10605 0.59 +0.6 2,240,471 + BWI76_RS10605 0.59 +1.8 2,240,479 - BWI76_RS10605 0.60 -1.4 2,240,525 + BWI76_RS10605 0.67 +0.5 2,240,525 + BWI76_RS10605 0.67 -1.6 2,240,525 + BWI76_RS10605 0.67 -1.2 2,240,525 + BWI76_RS10605 0.67 +2.6 2,240,525 + BWI76_RS10605 0.67 +0.6 2,240,525 + BWI76_RS10605 0.67 +0.1 2,240,533 - BWI76_RS10605 0.68 +1.8 2,240,578 + BWI76_RS10605 0.75 +0.8 2,240,603 + +1.2 2,240,603 + BWI76_RS10605 0.78 +0.0 2,240,611 + BWI76_RS10605 0.79 -0.4 2,240,637 - BWI76_RS10605 0.83 +1.4 2,240,639 - BWI76_RS10605 0.83 -1.5 2,240,643 + BWI76_RS10605 0.84 -0.4 2,240,687 + -1.2 2,240,687 + -0.3 2,240,687 + -0.2 2,240,687 + +0.6 2,240,687 + +2.1 2,240,687 + +0.2 2,240,687 + +0.4 2,240,695 + +0.9 2,240,716 - -0.0 2,240,813 - -0.8 2,240,813 - +0.2 2,240,817 - +1.6 2,240,846 + +0.9 2,240,846 + +0.7 2,240,856 + +1.2 2,240,856 + -0.7 2,240,857 - -0.2 2,240,872 - -2.3 2,240,895 - +0.1 2,240,918 + -0.3 2,240,924 + +1.6 2,240,938 - +2.0 2,240,938 - +0.1 2,240,951 + -0.4 2,240,953 + +1.0 2,240,953 + +0.1 2,240,953 + +0.8 2,240,953 + +0.6 2,240,953 + +0.8 2,240,953 + +0.2 2,240,953 + +0.1 2,240,961 - +3.3 2,240,961 - +5.6 2,240,961 - -0.9 2,240,981 - +0.4 2,240,997 + -0.5 2,241,296 + +0.8 2,241,314 + +0.5 2,241,323 + +0.9 2,241,331 - +1.4 2,241,331 - -0.8 2,241,353 + +0.8 2,241,373 - -0.6 2,241,379 + +0.5 2,241,402 + -0.7 2,241,435 + +0.9 2,241,435 + -0.0 2,241,525 + -0.1 2,241,525 + BWI76_RS10610 0.14 -0.2 2,241,525 + BWI76_RS10610 0.14 +0.5 2,241,531 + BWI76_RS10610 0.15 +4.5 2,241,531 + BWI76_RS10610 0.15 +4.2 2,241,531 + BWI76_RS10610 0.15 +0.1 2,241,578 + BWI76_RS10610 0.23 -0.8 2,241,586 - BWI76_RS10610 0.25 +1.3 2,241,611 + BWI76_RS10610 0.29 +2.3 2,241,616 + BWI76_RS10610 0.30 -0.5 2,241,725 + BWI76_RS10610 0.50 -0.1 2,241,892 + BWI76_RS10610 0.81 +1.8 2,242,116 + -1.2 2,242,214 - BWI76_RS10615 0.11 -0.6 2,242,302 + BWI76_RS10615 0.41 +0.9 2,242,308 - BWI76_RS10615 0.43 -0.2 2,242,408 + BWI76_RS10615 0.76 -1.4 2,242,408 - BWI76_RS10615 0.76 +0.3 2,242,422 + +1.0 2,242,422 + BWI76_RS10615 0.81 -0.2 2,242,430 - BWI76_RS10615 0.84 +1.2 2,242,452 + +0.4 2,242,545 + +3.0 2,242,567 - +0.1 2,242,662 + -0.6 2,242,707 + -0.8 2,242,760 + BWI76_RS10620 0.14 +0.5 2,242,796 + BWI76_RS10620 0.18 -0.3 2,242,888 + BWI76_RS10620 0.26 -0.7 2,242,922 - BWI76_RS10620 0.29 -0.3 2,242,938 + BWI76_RS10620 0.31 +0.7 2,242,943 + BWI76_RS10620 0.31 +0.0 2,242,949 - BWI76_RS10620 0.32 +0.5 2,242,951 - BWI76_RS10620 0.32 -0.4
Or see this region's nucleotide sequence