Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09260 and BWI76_RS09265 overlap by 1 nucleotides BWI76_RS09265 and BWI76_RS09270 are separated by 140 nucleotides BWI76_RS09270 and BWI76_RS09275 are separated by 16 nucleotides
BWI76_RS09260: BWI76_RS09260 - portal vertex-like protein, at 1,950,127 to 1,951,152
_RS09260
BWI76_RS09265: BWI76_RS09265 - oxidoreductase, at 1,951,152 to 1,952,915
_RS09265
BWI76_RS09270: BWI76_RS09270 - capsid scaffold-like protein, at 1,953,056 to 1,953,889
_RS09270
BWI76_RS09275: BWI76_RS09275 - major capsid protein, at 1,953,906 to 1,954,958
_RS09275
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 1950.249 kb on - strand, within BWI76_RS09260 at 1950.249 kb on - strand, within BWI76_RS09260 at 1950.249 kb on - strand, within BWI76_RS09260 at 1950.251 kb on + strand, within BWI76_RS09260 at 1950.252 kb on - strand, within BWI76_RS09260 at 1950.259 kb on - strand, within BWI76_RS09260 at 1950.259 kb on - strand, within BWI76_RS09260 at 1950.260 kb on - strand, within BWI76_RS09260 at 1950.266 kb on + strand, within BWI76_RS09260 at 1950.274 kb on - strand, within BWI76_RS09260 at 1950.274 kb on - strand, within BWI76_RS09260 at 1950.274 kb on - strand, within BWI76_RS09260 at 1950.274 kb on - strand, within BWI76_RS09260 at 1950.275 kb on - strand, within BWI76_RS09260 at 1950.280 kb on - strand, within BWI76_RS09260 at 1950.284 kb on - strand, within BWI76_RS09260 at 1950.284 kb on - strand, within BWI76_RS09260 at 1950.289 kb on - strand, within BWI76_RS09260 at 1950.292 kb on - strand, within BWI76_RS09260 at 1950.297 kb on - strand, within BWI76_RS09260 at 1950.314 kb on + strand, within BWI76_RS09260 at 1950.314 kb on + strand, within BWI76_RS09260 at 1950.322 kb on - strand, within BWI76_RS09260 at 1950.322 kb on - strand, within BWI76_RS09260 at 1950.322 kb on - strand, within BWI76_RS09260 at 1950.322 kb on - strand at 1950.353 kb on + strand, within BWI76_RS09260 at 1950.379 kb on - strand, within BWI76_RS09260 at 1950.432 kb on - strand, within BWI76_RS09260 at 1950.432 kb on - strand, within BWI76_RS09260 at 1950.494 kb on + strand, within BWI76_RS09260 at 1950.499 kb on + strand, within BWI76_RS09260 at 1950.499 kb on + strand, within BWI76_RS09260 at 1950.565 kb on + strand, within BWI76_RS09260 at 1950.596 kb on + strand, within BWI76_RS09260 at 1950.602 kb on - strand, within BWI76_RS09260 at 1950.604 kb on - strand, within BWI76_RS09260 at 1950.725 kb on - strand, within BWI76_RS09260 at 1950.940 kb on + strand, within BWI76_RS09260 at 1951.038 kb on + strand, within BWI76_RS09260 at 1951.141 kb on + strand at 1951.241 kb on - strand at 1951.390 kb on + strand, within BWI76_RS09265 at 1951.546 kb on + strand, within BWI76_RS09265 at 1951.778 kb on - strand, within BWI76_RS09265 at 1951.945 kb on + strand, within BWI76_RS09265 at 1951.985 kb on - strand, within BWI76_RS09265 at 1952.017 kb on + strand, within BWI76_RS09265 at 1952.190 kb on + strand, within BWI76_RS09265 at 1952.244 kb on - strand, within BWI76_RS09265 at 1952.260 kb on + strand, within BWI76_RS09265 at 1952.272 kb on + strand, within BWI76_RS09265 at 1952.370 kb on - strand, within BWI76_RS09265 at 1952.374 kb on - strand, within BWI76_RS09265 at 1952.374 kb on - strand, within BWI76_RS09265 at 1952.410 kb on - strand, within BWI76_RS09265 at 1952.599 kb on - strand, within BWI76_RS09265 at 1952.750 kb on + strand at 1952.767 kb on - strand at 1952.767 kb on - strand at 1952.935 kb on + strand at 1952.938 kb on - strand at 1952.993 kb on + strand at 1953.153 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.166 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.209 kb on + strand, within BWI76_RS09270 at 1953.420 kb on + strand, within BWI76_RS09270 at 1953.694 kb on - strand, within BWI76_RS09270 at 1953.741 kb on - strand, within BWI76_RS09270
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,950,249 - BWI76_RS09260 0.12 -2.3 1,950,249 - BWI76_RS09260 0.12 -0.3 1,950,249 - BWI76_RS09260 0.12 +0.4 1,950,251 + BWI76_RS09260 0.12 -0.1 1,950,252 - BWI76_RS09260 0.12 +0.1 1,950,259 - BWI76_RS09260 0.13 +0.2 1,950,259 - BWI76_RS09260 0.13 -1.3 1,950,260 - BWI76_RS09260 0.13 -1.0 1,950,266 + BWI76_RS09260 0.14 +0.0 1,950,274 - BWI76_RS09260 0.14 -0.6 1,950,274 - BWI76_RS09260 0.14 -1.8 1,950,274 - BWI76_RS09260 0.14 -0.0 1,950,274 - BWI76_RS09260 0.14 -0.1 1,950,275 - BWI76_RS09260 0.14 -0.1 1,950,280 - BWI76_RS09260 0.15 +0.6 1,950,284 - BWI76_RS09260 0.15 -1.5 1,950,284 - BWI76_RS09260 0.15 -1.2 1,950,289 - BWI76_RS09260 0.16 +0.3 1,950,292 - BWI76_RS09260 0.16 -1.1 1,950,297 - BWI76_RS09260 0.17 -0.4 1,950,314 + BWI76_RS09260 0.18 +2.5 1,950,314 + BWI76_RS09260 0.18 -1.3 1,950,322 - BWI76_RS09260 0.19 +0.0 1,950,322 - BWI76_RS09260 0.19 +0.0 1,950,322 - BWI76_RS09260 0.19 -0.7 1,950,322 - +0.4 1,950,353 + BWI76_RS09260 0.22 -0.6 1,950,379 - BWI76_RS09260 0.25 -0.2 1,950,432 - BWI76_RS09260 0.30 +6.6 1,950,432 - BWI76_RS09260 0.30 -1.1 1,950,494 + BWI76_RS09260 0.36 +0.1 1,950,499 + BWI76_RS09260 0.36 +0.2 1,950,499 + BWI76_RS09260 0.36 -1.0 1,950,565 + BWI76_RS09260 0.43 -0.7 1,950,596 + BWI76_RS09260 0.46 +1.5 1,950,602 - BWI76_RS09260 0.46 +0.4 1,950,604 - BWI76_RS09260 0.46 -0.3 1,950,725 - BWI76_RS09260 0.58 -1.8 1,950,940 + BWI76_RS09260 0.79 -0.8 1,951,038 + BWI76_RS09260 0.89 +0.2 1,951,141 + -0.0 1,951,241 - -1.3 1,951,390 + BWI76_RS09265 0.13 -0.6 1,951,546 + BWI76_RS09265 0.22 +1.0 1,951,778 - BWI76_RS09265 0.35 +5.7 1,951,945 + BWI76_RS09265 0.45 +1.7 1,951,985 - BWI76_RS09265 0.47 -1.1 1,952,017 + BWI76_RS09265 0.49 +1.1 1,952,190 + BWI76_RS09265 0.59 -0.0 1,952,244 - BWI76_RS09265 0.62 -1.0 1,952,260 + BWI76_RS09265 0.63 -1.1 1,952,272 + BWI76_RS09265 0.63 +0.2 1,952,370 - BWI76_RS09265 0.69 -0.1 1,952,374 - BWI76_RS09265 0.69 -0.8 1,952,374 - BWI76_RS09265 0.69 +0.3 1,952,410 - BWI76_RS09265 0.71 +0.8 1,952,599 - BWI76_RS09265 0.82 -0.9 1,952,750 + -0.3 1,952,767 - -0.3 1,952,767 - -1.1 1,952,935 + -0.0 1,952,938 - -0.9 1,952,993 + +0.2 1,953,153 + BWI76_RS09270 0.12 -0.2 1,953,166 + BWI76_RS09270 0.13 +0.1 1,953,166 + BWI76_RS09270 0.13 +1.1 1,953,166 + BWI76_RS09270 0.13 -1.2 1,953,209 + BWI76_RS09270 0.18 +0.6 1,953,209 + BWI76_RS09270 0.18 -0.7 1,953,209 + BWI76_RS09270 0.18 -0.3 1,953,420 + BWI76_RS09270 0.44 -1.4 1,953,694 - BWI76_RS09270 0.76 +0.4 1,953,741 - BWI76_RS09270 0.82 -0.7
Or see this region's nucleotide sequence