Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07230

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07225 and BWI76_RS07230 are separated by 99 nucleotidesBWI76_RS07230 and BWI76_RS07235 are separated by 450 nucleotides BWI76_RS07225: BWI76_RS07225 - putative oxidoreductase, at 1,519,924 to 1,520,931 _RS07225 BWI76_RS07230: BWI76_RS07230 - transcriptional regulator, at 1,521,031 to 1,522,050 _RS07230 BWI76_RS07235: BWI76_RS07235 - hypothetical protein, at 1,522,501 to 1,523,424 _RS07235 Position (kb) 1521 1522 1523Strain fitness (log2 ratio) -1 0 1at 1520.042 kb on - strand, within BWI76_RS07225at 1520.222 kb on + strand, within BWI76_RS07225at 1520.230 kb on - strand, within BWI76_RS07225at 1520.485 kb on - strand, within BWI76_RS07225at 1521.307 kb on + strand, within BWI76_RS07230at 1521.604 kb on + strand, within BWI76_RS07230at 1521.782 kb on - strand, within BWI76_RS07230at 1521.894 kb on + strand, within BWI76_RS07230at 1522.277 kb on + strandat 1522.527 kb on + strandat 1522.539 kb on - strandat 1522.611 kb on - strand, within BWI76_RS07235at 1522.697 kb on + strand, within BWI76_RS07235at 1522.896 kb on + strand, within BWI76_RS07235at 1522.960 kb on - strand, within BWI76_RS07235at 1523.007 kb on + strand, within BWI76_RS07235

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,520,042 - BWI76_RS07225 0.12 +0.5
1,520,222 + BWI76_RS07225 0.30 -1.2
1,520,230 - BWI76_RS07225 0.30 +0.1
1,520,485 - BWI76_RS07225 0.56 +0.3
1,521,307 + BWI76_RS07230 0.27 -0.5
1,521,604 + BWI76_RS07230 0.56 -1.6
1,521,782 - BWI76_RS07230 0.74 -1.6
1,521,894 + BWI76_RS07230 0.85 -1.2
1,522,277 + +0.3
1,522,527 + -0.3
1,522,539 - +0.5
1,522,611 - BWI76_RS07235 0.12 -0.9
1,522,697 + BWI76_RS07235 0.21 -0.0
1,522,896 + BWI76_RS07235 0.43 -0.0
1,522,960 - BWI76_RS07235 0.50 -0.2
1,523,007 + BWI76_RS07235 0.55 -1.2

Or see this region's nucleotide sequence