Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06275

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06270 and BWI76_RS06275 are separated by 123 nucleotidesBWI76_RS06275 and BWI76_RS06280 overlap by 4 nucleotides BWI76_RS06270: BWI76_RS06270 - amidohydrolase, at 1,317,484 to 1,319,352 _RS06270 BWI76_RS06275: BWI76_RS06275 - beta-carotene 15,15'-monooxygenase, at 1,319,476 to 1,322,127 _RS06275 BWI76_RS06280: BWI76_RS06280 - hypothetical protein, at 1,322,124 to 1,323,518 _RS06280 Position (kb) 1319 1320 1321 1322 1323Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1318.828 kb on + strand, within BWI76_RS06270at 1319.054 kb on + strand, within BWI76_RS06270at 1319.172 kb on - strandat 1319.323 kb on + strandat 1319.408 kb on + strandat 1319.501 kb on + strandat 1319.640 kb on - strandat 1319.660 kb on - strandat 1319.917 kb on + strand, within BWI76_RS06275at 1319.942 kb on - strand, within BWI76_RS06275at 1319.979 kb on + strand, within BWI76_RS06275at 1319.987 kb on - strand, within BWI76_RS06275at 1319.992 kb on - strand, within BWI76_RS06275at 1320.007 kb on - strand, within BWI76_RS06275at 1320.091 kb on - strand, within BWI76_RS06275at 1320.176 kb on + strand, within BWI76_RS06275at 1320.209 kb on + strand, within BWI76_RS06275at 1320.350 kb on - strand, within BWI76_RS06275at 1320.775 kb on + strand, within BWI76_RS06275at 1320.805 kb on - strand, within BWI76_RS06275at 1320.806 kb on - strand, within BWI76_RS06275at 1321.082 kb on - strand, within BWI76_RS06275at 1321.305 kb on + strand, within BWI76_RS06275at 1321.305 kb on + strand, within BWI76_RS06275at 1321.532 kb on + strand, within BWI76_RS06275at 1321.540 kb on - strand, within BWI76_RS06275at 1321.611 kb on + strand, within BWI76_RS06275at 1321.813 kb on + strand, within BWI76_RS06275at 1321.893 kb on + strandat 1321.924 kb on - strandat 1321.959 kb on + strandat 1322.039 kb on + strandat 1322.152 kb on - strandat 1322.475 kb on - strand, within BWI76_RS06280at 1322.707 kb on + strand, within BWI76_RS06280at 1322.829 kb on + strand, within BWI76_RS06280at 1322.888 kb on + strand, within BWI76_RS06280at 1322.990 kb on - strand, within BWI76_RS06280

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,318,828 + BWI76_RS06270 0.72 +0.5
1,319,054 + BWI76_RS06270 0.84 -0.8
1,319,172 - -0.0
1,319,323 + -2.2
1,319,408 + -0.6
1,319,501 + -1.3
1,319,640 - +0.1
1,319,660 - -0.3
1,319,917 + BWI76_RS06275 0.17 -1.1
1,319,942 - BWI76_RS06275 0.18 -0.4
1,319,979 + BWI76_RS06275 0.19 +0.1
1,319,987 - BWI76_RS06275 0.19 +1.1
1,319,992 - BWI76_RS06275 0.19 -1.0
1,320,007 - BWI76_RS06275 0.20 -2.1
1,320,091 - BWI76_RS06275 0.23 +0.5
1,320,176 + BWI76_RS06275 0.26 +0.4
1,320,209 + BWI76_RS06275 0.28 -0.0
1,320,350 - BWI76_RS06275 0.33 +4.6
1,320,775 + BWI76_RS06275 0.49 -1.6
1,320,805 - BWI76_RS06275 0.50 -0.9
1,320,806 - BWI76_RS06275 0.50 -0.2
1,321,082 - BWI76_RS06275 0.61 -0.0
1,321,305 + BWI76_RS06275 0.69 +0.4
1,321,305 + BWI76_RS06275 0.69 +1.9
1,321,532 + BWI76_RS06275 0.78 -0.1
1,321,540 - BWI76_RS06275 0.78 +2.1
1,321,611 + BWI76_RS06275 0.81 +2.1
1,321,813 + BWI76_RS06275 0.88 -0.2
1,321,893 + -1.5
1,321,924 - +0.2
1,321,959 + -0.5
1,322,039 + -0.8
1,322,152 - +0.3
1,322,475 - BWI76_RS06280 0.25 -0.1
1,322,707 + BWI76_RS06280 0.42 -0.3
1,322,829 + BWI76_RS06280 0.51 +0.5
1,322,888 + BWI76_RS06280 0.55 +0.8
1,322,990 - BWI76_RS06280 0.62 -1.9

Or see this region's nucleotide sequence