Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04870

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04865 and BWI76_RS04870 are separated by 176 nucleotidesBWI76_RS04870 and BWI76_RS04875 are separated by 655 nucleotides BWI76_RS04865: BWI76_RS04865 - MFS transporter, at 1,015,501 to 1,016,907 _RS04865 BWI76_RS04870: BWI76_RS04870 - aromatic amino acid transporter AroP, at 1,017,084 to 1,018,451 _RS04870 BWI76_RS04875: BWI76_RS04875 - transcriptional regulator PdhR, at 1,019,107 to 1,019,886 _RS04875 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 1016.093 kb on - strand, within BWI76_RS04865at 1016.093 kb on - strand, within BWI76_RS04865at 1016.132 kb on + strand, within BWI76_RS04865at 1016.149 kb on - strand, within BWI76_RS04865at 1016.274 kb on - strandat 1016.367 kb on - strand, within BWI76_RS04865at 1016.380 kb on - strand, within BWI76_RS04865at 1016.535 kb on + strand, within BWI76_RS04865at 1016.545 kb on - strand, within BWI76_RS04865at 1016.612 kb on + strand, within BWI76_RS04865at 1016.617 kb on + strand, within BWI76_RS04865at 1016.632 kb on - strand, within BWI76_RS04865at 1016.632 kb on - strand, within BWI76_RS04865at 1016.754 kb on + strand, within BWI76_RS04865at 1016.755 kb on + strand, within BWI76_RS04865at 1016.757 kb on + strand, within BWI76_RS04865at 1016.986 kb on - strandat 1017.187 kb on - strandat 1017.428 kb on + strand, within BWI76_RS04870at 1017.429 kb on - strand, within BWI76_RS04870at 1017.524 kb on + strand, within BWI76_RS04870at 1017.524 kb on + strand, within BWI76_RS04870at 1017.532 kb on - strand, within BWI76_RS04870at 1017.560 kb on - strand, within BWI76_RS04870at 1017.588 kb on + strand, within BWI76_RS04870at 1017.808 kb on - strand, within BWI76_RS04870at 1017.808 kb on - strand, within BWI76_RS04870at 1017.837 kb on + strand, within BWI76_RS04870at 1017.837 kb on + strand, within BWI76_RS04870at 1018.021 kb on - strand, within BWI76_RS04870at 1018.528 kb on - strandat 1018.528 kb on - strandat 1018.962 kb on + strandat 1019.425 kb on + strand, within BWI76_RS04875at 1019.425 kb on + strand, within BWI76_RS04875at 1019.433 kb on - strand, within BWI76_RS04875

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,016,093 - BWI76_RS04865 0.42 -0.2
1,016,093 - BWI76_RS04865 0.42 -0.7
1,016,132 + BWI76_RS04865 0.45 -0.2
1,016,149 - BWI76_RS04865 0.46 +0.2
1,016,274 - +3.2
1,016,367 - BWI76_RS04865 0.62 +0.2
1,016,380 - BWI76_RS04865 0.62 +3.7
1,016,535 + BWI76_RS04865 0.73 -0.0
1,016,545 - BWI76_RS04865 0.74 +0.2
1,016,612 + BWI76_RS04865 0.79 +0.7
1,016,617 + BWI76_RS04865 0.79 -0.9
1,016,632 - BWI76_RS04865 0.80 +0.4
1,016,632 - BWI76_RS04865 0.80 -0.5
1,016,754 + BWI76_RS04865 0.89 -0.8
1,016,755 + BWI76_RS04865 0.89 -1.2
1,016,757 + BWI76_RS04865 0.89 -0.2
1,016,986 - +1.1
1,017,187 - +0.1
1,017,428 + BWI76_RS04870 0.25 -0.4
1,017,429 - BWI76_RS04870 0.25 -0.9
1,017,524 + BWI76_RS04870 0.32 +0.1
1,017,524 + BWI76_RS04870 0.32 +1.5
1,017,532 - BWI76_RS04870 0.33 +1.1
1,017,560 - BWI76_RS04870 0.35 -0.9
1,017,588 + BWI76_RS04870 0.37 -0.8
1,017,808 - BWI76_RS04870 0.53 -0.6
1,017,808 - BWI76_RS04870 0.53 -0.3
1,017,837 + BWI76_RS04870 0.55 +0.6
1,017,837 + BWI76_RS04870 0.55 +8.2
1,018,021 - BWI76_RS04870 0.68 +0.3
1,018,528 - +0.1
1,018,528 - +2.9
1,018,962 + +0.8
1,019,425 + BWI76_RS04875 0.41 +3.3
1,019,425 + BWI76_RS04875 0.41 -0.0
1,019,433 - BWI76_RS04875 0.42 +0.5

Or see this region's nucleotide sequence