Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04385 and BWI76_RS04390 are separated by 185 nucleotides BWI76_RS04390 and BWI76_RS04395 overlap by 68 nucleotides BWI76_RS04395 and BWI76_RS04400 are separated by 92 nucleotides
BWI76_RS04385: BWI76_RS04385 - hydratase, at 904,159 to 906,450
_RS04385
BWI76_RS04390: BWI76_RS04390 - DUF805 domain-containing protein, at 906,636 to 906,998
_RS04390
BWI76_RS04395: BWI76_RS04395 - putative HTH-type transcriptional regulator, at 906,931 to 907,875
_RS04395
BWI76_RS04400: BWI76_RS04400 - alanyl-tRNA synthetase, at 907,968 to 908,597
_RS04400
Position (kb) 906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 905.640 kb on + strand, within BWI76_RS04385 at 905.640 kb on + strand, within BWI76_RS04385 at 905.648 kb on - strand, within BWI76_RS04385 at 905.648 kb on - strand, within BWI76_RS04385 at 905.648 kb on - strand, within BWI76_RS04385 at 905.684 kb on + strand, within BWI76_RS04385 at 905.685 kb on - strand, within BWI76_RS04385 at 905.731 kb on + strand, within BWI76_RS04385 at 905.731 kb on + strand, within BWI76_RS04385 at 905.731 kb on + strand, within BWI76_RS04385 at 905.739 kb on - strand, within BWI76_RS04385 at 905.836 kb on + strand, within BWI76_RS04385 at 905.844 kb on - strand, within BWI76_RS04385 at 905.844 kb on - strand, within BWI76_RS04385 at 905.851 kb on - strand, within BWI76_RS04385 at 905.856 kb on + strand at 905.863 kb on + strand, within BWI76_RS04385 at 905.863 kb on - strand, within BWI76_RS04385 at 905.863 kb on - strand, within BWI76_RS04385 at 905.864 kb on + strand, within BWI76_RS04385 at 905.864 kb on + strand, within BWI76_RS04385 at 905.864 kb on + strand, within BWI76_RS04385 at 905.864 kb on + strand, within BWI76_RS04385 at 905.864 kb on + strand, within BWI76_RS04385 at 905.871 kb on - strand, within BWI76_RS04385 at 905.872 kb on - strand, within BWI76_RS04385 at 905.872 kb on - strand, within BWI76_RS04385 at 905.879 kb on + strand, within BWI76_RS04385 at 905.879 kb on + strand, within BWI76_RS04385 at 905.879 kb on + strand, within BWI76_RS04385 at 905.887 kb on - strand, within BWI76_RS04385 at 905.904 kb on + strand, within BWI76_RS04385 at 905.904 kb on + strand, within BWI76_RS04385 at 905.909 kb on + strand, within BWI76_RS04385 at 905.912 kb on - strand, within BWI76_RS04385 at 905.917 kb on - strand, within BWI76_RS04385 at 905.952 kb on + strand, within BWI76_RS04385 at 905.961 kb on + strand, within BWI76_RS04385 at 905.969 kb on - strand, within BWI76_RS04385 at 905.975 kb on - strand, within BWI76_RS04385 at 905.975 kb on - strand, within BWI76_RS04385 at 905.975 kb on - strand, within BWI76_RS04385 at 906.041 kb on + strand, within BWI76_RS04385 at 906.051 kb on + strand at 906.055 kb on + strand, within BWI76_RS04385 at 906.055 kb on + strand, within BWI76_RS04385 at 906.055 kb on + strand, within BWI76_RS04385 at 906.055 kb on - strand, within BWI76_RS04385 at 906.063 kb on - strand, within BWI76_RS04385 at 906.063 kb on - strand, within BWI76_RS04385 at 906.063 kb on - strand, within BWI76_RS04385 at 906.070 kb on - strand, within BWI76_RS04385 at 906.130 kb on - strand, within BWI76_RS04385 at 906.130 kb on - strand, within BWI76_RS04385 at 906.130 kb on - strand, within BWI76_RS04385 at 906.130 kb on - strand, within BWI76_RS04385 at 906.144 kb on + strand, within BWI76_RS04385 at 906.144 kb on + strand, within BWI76_RS04385 at 906.144 kb on + strand, within BWI76_RS04385 at 906.152 kb on - strand, within BWI76_RS04385 at 906.159 kb on + strand, within BWI76_RS04385 at 906.162 kb on + strand, within BWI76_RS04385 at 906.162 kb on - strand, within BWI76_RS04385 at 906.162 kb on - strand, within BWI76_RS04385 at 906.167 kb on - strand, within BWI76_RS04385 at 906.169 kb on + strand, within BWI76_RS04385 at 906.177 kb on - strand, within BWI76_RS04385 at 906.182 kb on + strand, within BWI76_RS04385 at 906.190 kb on + strand, within BWI76_RS04385 at 906.190 kb on + strand, within BWI76_RS04385 at 906.190 kb on + strand, within BWI76_RS04385 at 906.190 kb on + strand, within BWI76_RS04385 at 906.190 kb on - strand, within BWI76_RS04385 at 906.200 kb on + strand, within BWI76_RS04385 at 906.219 kb on + strand, within BWI76_RS04385 at 906.219 kb on + strand at 906.227 kb on - strand at 906.236 kb on + strand at 906.244 kb on - strand at 906.244 kb on - strand at 906.265 kb on - strand at 906.270 kb on + strand at 906.271 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.323 kb on + strand at 906.328 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.331 kb on - strand at 906.333 kb on - strand at 906.335 kb on + strand at 906.335 kb on + strand at 906.343 kb on - strand at 906.343 kb on - strand at 906.382 kb on - strand at 906.445 kb on + strand at 906.445 kb on + strand at 906.453 kb on - strand at 906.453 kb on - strand at 906.504 kb on + strand at 906.523 kb on - strand at 906.530 kb on + strand at 906.539 kb on - strand at 906.547 kb on + strand at 906.547 kb on + strand at 906.555 kb on - strand at 906.561 kb on + strand at 906.565 kb on - strand at 906.567 kb on + strand at 906.567 kb on + strand at 906.569 kb on - strand at 906.569 kb on - strand at 906.569 kb on - strand at 906.569 kb on - strand at 906.572 kb on + strand at 906.572 kb on + strand at 906.577 kb on + strand at 906.577 kb on + strand at 906.599 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.608 kb on + strand at 906.614 kb on + strand at 906.615 kb on + strand at 906.615 kb on + strand at 906.615 kb on + strand at 906.615 kb on + strand at 906.616 kb on - strand at 906.616 kb on - strand at 906.616 kb on - strand at 906.617 kb on + strand at 906.623 kb on - strand at 906.623 kb on - strand at 906.623 kb on - strand at 906.623 kb on - strand at 906.623 kb on - strand at 906.649 kb on - strand at 906.664 kb on + strand at 906.691 kb on - strand, within BWI76_RS04390 at 906.695 kb on + strand, within BWI76_RS04390 at 906.742 kb on + strand, within BWI76_RS04390 at 906.742 kb on + strand, within BWI76_RS04390 at 906.782 kb on + strand, within BWI76_RS04390 at 906.785 kb on - strand, within BWI76_RS04390 at 906.787 kb on + strand, within BWI76_RS04390 at 906.790 kb on - strand, within BWI76_RS04390 at 906.792 kb on + strand, within BWI76_RS04390 at 906.795 kb on - strand, within BWI76_RS04390 at 906.824 kb on + strand, within BWI76_RS04390 at 906.832 kb on - strand, within BWI76_RS04390 at 906.845 kb on + strand, within BWI76_RS04390 at 906.851 kb on - strand, within BWI76_RS04390 at 906.853 kb on - strand, within BWI76_RS04390 at 906.853 kb on - strand, within BWI76_RS04390 at 906.868 kb on + strand, within BWI76_RS04390 at 906.887 kb on + strand, within BWI76_RS04390 at 906.893 kb on + strand, within BWI76_RS04390 at 906.926 kb on - strand, within BWI76_RS04390 at 906.955 kb on + strand at 906.957 kb on + strand at 906.963 kb on - strand at 906.968 kb on - strand at 906.978 kb on - strand at 907.036 kb on - strand, within BWI76_RS04395 at 907.055 kb on + strand, within BWI76_RS04395 at 907.060 kb on - strand, within BWI76_RS04395 at 907.073 kb on - strand, within BWI76_RS04395 at 907.197 kb on + strand, within BWI76_RS04395 at 907.425 kb on + strand, within BWI76_RS04395 at 907.457 kb on - strand, within BWI76_RS04395 at 907.735 kb on + strand, within BWI76_RS04395 at 907.749 kb on - strand, within BWI76_RS04395 at 907.957 kb on + strand at 907.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 905,640 + BWI76_RS04385 0.65 -0.2 905,640 + BWI76_RS04385 0.65 -1.2 905,648 - BWI76_RS04385 0.65 +0.1 905,648 - BWI76_RS04385 0.65 +0.3 905,648 - BWI76_RS04385 0.65 -0.7 905,684 + BWI76_RS04385 0.67 +1.1 905,685 - BWI76_RS04385 0.67 -1.0 905,731 + BWI76_RS04385 0.69 -0.4 905,731 + BWI76_RS04385 0.69 -0.1 905,731 + BWI76_RS04385 0.69 -0.7 905,739 - BWI76_RS04385 0.69 +0.4 905,836 + BWI76_RS04385 0.73 +0.5 905,844 - BWI76_RS04385 0.74 +5.6 905,844 - BWI76_RS04385 0.74 +2.4 905,851 - BWI76_RS04385 0.74 -0.6 905,856 + -1.2 905,863 + BWI76_RS04385 0.74 -0.2 905,863 - BWI76_RS04385 0.74 +1.6 905,863 - BWI76_RS04385 0.74 +1.3 905,864 + BWI76_RS04385 0.74 -0.5 905,864 + BWI76_RS04385 0.74 -0.2 905,864 + BWI76_RS04385 0.74 -0.0 905,864 + BWI76_RS04385 0.74 -1.4 905,864 + BWI76_RS04385 0.74 +0.4 905,871 - BWI76_RS04385 0.75 -0.6 905,872 - BWI76_RS04385 0.75 +0.9 905,872 - BWI76_RS04385 0.75 +0.5 905,879 + BWI76_RS04385 0.75 +1.5 905,879 + BWI76_RS04385 0.75 -0.1 905,879 + BWI76_RS04385 0.75 +0.7 905,887 - BWI76_RS04385 0.75 +0.2 905,904 + BWI76_RS04385 0.76 +0.3 905,904 + BWI76_RS04385 0.76 -1.3 905,909 + BWI76_RS04385 0.76 -0.4 905,912 - BWI76_RS04385 0.76 +2.4 905,917 - BWI76_RS04385 0.77 +0.0 905,952 + BWI76_RS04385 0.78 -0.7 905,961 + BWI76_RS04385 0.79 +0.2 905,969 - BWI76_RS04385 0.79 -1.7 905,975 - BWI76_RS04385 0.79 +0.6 905,975 - BWI76_RS04385 0.79 +1.0 905,975 - BWI76_RS04385 0.79 +0.1 906,041 + BWI76_RS04385 0.82 +0.3 906,051 + +0.8 906,055 + BWI76_RS04385 0.83 +0.6 906,055 + BWI76_RS04385 0.83 -0.3 906,055 + BWI76_RS04385 0.83 -2.2 906,055 - BWI76_RS04385 0.83 -0.7 906,063 - BWI76_RS04385 0.83 +1.5 906,063 - BWI76_RS04385 0.83 +1.0 906,063 - BWI76_RS04385 0.83 -0.1 906,070 - BWI76_RS04385 0.83 +2.0 906,130 - BWI76_RS04385 0.86 +0.3 906,130 - BWI76_RS04385 0.86 +0.2 906,130 - BWI76_RS04385 0.86 +1.0 906,130 - BWI76_RS04385 0.86 -1.0 906,144 + BWI76_RS04385 0.87 -1.0 906,144 + BWI76_RS04385 0.87 -0.2 906,144 + BWI76_RS04385 0.87 +1.3 906,152 - BWI76_RS04385 0.87 +1.2 906,159 + BWI76_RS04385 0.87 -1.7 906,162 + BWI76_RS04385 0.87 +0.2 906,162 - BWI76_RS04385 0.87 -0.2 906,162 - BWI76_RS04385 0.87 -1.7 906,167 - BWI76_RS04385 0.88 +0.6 906,169 + BWI76_RS04385 0.88 +0.2 906,177 - BWI76_RS04385 0.88 +0.9 906,182 + BWI76_RS04385 0.88 +1.3 906,190 + BWI76_RS04385 0.89 -1.1 906,190 + BWI76_RS04385 0.89 -0.3 906,190 + BWI76_RS04385 0.89 +3.5 906,190 + BWI76_RS04385 0.89 -3.1 906,190 - BWI76_RS04385 0.89 -1.9 906,200 + BWI76_RS04385 0.89 -0.7 906,219 + BWI76_RS04385 0.90 -1.1 906,219 + +2.3 906,227 - -1.9 906,236 + +0.6 906,244 - -2.0 906,244 - -1.2 906,265 - -0.9 906,270 + -0.2 906,271 + +0.4 906,323 + -1.4 906,323 + +0.2 906,323 + +1.7 906,323 + +1.4 906,323 + +3.5 906,323 + +0.2 906,323 + +0.5 906,323 + +0.8 906,323 + -0.5 906,323 + -1.4 906,323 + -1.9 906,323 + -0.1 906,323 + +0.7 906,323 + -2.4 906,323 + -0.3 906,323 + -0.3 906,323 + +0.3 906,323 + -0.3 906,323 + -0.4 906,323 + -0.4 906,323 + +0.7 906,323 + -0.6 906,323 + +0.5 906,323 + -0.1 906,328 - +0.4 906,331 - +0.3 906,331 - +0.5 906,331 - +0.4 906,331 - -2.5 906,331 - -0.9 906,331 - +0.9 906,331 - -0.3 906,331 - -0.3 906,331 - +1.5 906,331 - +1.6 906,331 - +0.3 906,331 - -0.2 906,331 - -0.5 906,331 - -2.4 906,331 - -1.5 906,331 - +2.8 906,331 - +0.5 906,331 - -0.0 906,331 - -1.7 906,331 - -1.1 906,333 - +0.4 906,335 + +0.3 906,335 + -1.5 906,343 - +0.0 906,343 - -0.3 906,382 - -0.0 906,445 + +0.7 906,445 + -0.1 906,453 - -0.5 906,453 - +0.7 906,504 + +0.1 906,523 - +0.0 906,530 + +1.1 906,539 - +0.6 906,547 + +0.2 906,547 + +0.1 906,555 - +1.4 906,561 + -1.6 906,565 - +0.2 906,567 + -0.2 906,567 + +0.4 906,569 - -0.2 906,569 - -0.5 906,569 - -0.3 906,569 - +1.2 906,572 + +1.7 906,572 + -0.3 906,577 + -0.4 906,577 + +0.6 906,599 + -1.2 906,608 + +0.8 906,608 + -0.0 906,608 + -0.7 906,608 + +0.3 906,608 + -0.2 906,608 + +0.2 906,608 + +0.6 906,608 + +0.4 906,608 + +1.5 906,614 + +0.1 906,615 + +0.3 906,615 + -1.8 906,615 + +9.2 906,615 + -1.9 906,616 - -0.5 906,616 - +0.0 906,616 - -1.9 906,617 + +0.2 906,623 - +1.4 906,623 - +0.2 906,623 - +1.1 906,623 - -0.6 906,623 - -0.1 906,649 - -1.3 906,664 + -0.4 906,691 - BWI76_RS04390 0.15 -0.4 906,695 + BWI76_RS04390 0.16 +0.8 906,742 + BWI76_RS04390 0.29 +1.2 906,742 + BWI76_RS04390 0.29 -1.5 906,782 + BWI76_RS04390 0.40 +1.2 906,785 - BWI76_RS04390 0.41 -1.6 906,787 + BWI76_RS04390 0.42 -0.6 906,790 - BWI76_RS04390 0.42 -0.8 906,792 + BWI76_RS04390 0.43 +0.4 906,795 - BWI76_RS04390 0.44 +3.9 906,824 + BWI76_RS04390 0.52 +1.5 906,832 - BWI76_RS04390 0.54 -0.6 906,845 + BWI76_RS04390 0.58 -1.8 906,851 - BWI76_RS04390 0.59 -0.1 906,853 - BWI76_RS04390 0.60 +1.1 906,853 - BWI76_RS04390 0.60 +0.3 906,868 + BWI76_RS04390 0.64 -0.3 906,887 + BWI76_RS04390 0.69 -1.5 906,893 + BWI76_RS04390 0.71 +1.0 906,926 - BWI76_RS04390 0.80 +0.0 906,955 + -0.3 906,957 + +0.3 906,963 - +0.9 906,968 - -2.1 906,978 - +0.3 907,036 - BWI76_RS04395 0.11 -1.4 907,055 + BWI76_RS04395 0.13 +0.2 907,060 - BWI76_RS04395 0.14 +1.8 907,073 - BWI76_RS04395 0.15 +0.6 907,197 + BWI76_RS04395 0.28 -1.6 907,425 + BWI76_RS04395 0.52 +2.0 907,457 - BWI76_RS04395 0.56 +1.2 907,735 + BWI76_RS04395 0.85 -0.0 907,749 - BWI76_RS04395 0.87 +0.6 907,957 + +0.4 907,964 + -0.0
Or see this region's nucleotide sequence