Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03965 and BWI76_RS03970 overlap by 23 nucleotides BWI76_RS03970 and BWI76_RS03975 are separated by 12 nucleotides BWI76_RS03975 and BWI76_RS03980 are separated by 18 nucleotides
BWI76_RS03965: BWI76_RS03965 - PTS sugar transporter, at 820,514 to 821,293
_RS03965
BWI76_RS03970: BWI76_RS03970 - PTS mannose/fructose/sorbose family transporter subunit IID, at 821,271 to 822,122
_RS03970
BWI76_RS03975: BWI76_RS03975 - glucosamine--fructose-6-phosphate aminotransferase, at 822,135 to 823,196
_RS03975
BWI76_RS03980: BWI76_RS03980 - sugar isomerase (SIS), at 823,215 to 824,225
_RS03980
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 821.214 kb on + strand, within BWI76_RS03965 at 821.327 kb on - strand at 821.357 kb on + strand, within BWI76_RS03970 at 821.450 kb on + strand, within BWI76_RS03970 at 821.703 kb on - strand, within BWI76_RS03970 at 821.723 kb on + strand, within BWI76_RS03970 at 821.802 kb on + strand, within BWI76_RS03970 at 821.817 kb on - strand, within BWI76_RS03970 at 821.866 kb on - strand, within BWI76_RS03970 at 821.881 kb on + strand, within BWI76_RS03970 at 822.038 kb on + strand at 822.161 kb on - strand at 822.379 kb on + strand, within BWI76_RS03975 at 822.440 kb on + strand, within BWI76_RS03975 at 822.501 kb on - strand, within BWI76_RS03975 at 822.644 kb on - strand, within BWI76_RS03975 at 822.727 kb on + strand, within BWI76_RS03975 at 822.964 kb on - strand, within BWI76_RS03975 at 822.966 kb on - strand, within BWI76_RS03975 at 823.008 kb on - strand, within BWI76_RS03975 at 823.008 kb on - strand, within BWI76_RS03975 at 823.014 kb on - strand, within BWI76_RS03975 at 823.043 kb on + strand, within BWI76_RS03975 at 823.044 kb on + strand, within BWI76_RS03975 at 823.044 kb on + strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand at 823.052 kb on - strand, within BWI76_RS03975 at 823.052 kb on - strand, within BWI76_RS03975 at 823.062 kb on - strand, within BWI76_RS03975 at 823.062 kb on - strand, within BWI76_RS03975 at 823.063 kb on + strand, within BWI76_RS03975 at 823.069 kb on + strand, within BWI76_RS03975 at 823.071 kb on - strand, within BWI76_RS03975 at 823.085 kb on - strand, within BWI76_RS03975 at 823.088 kb on + strand, within BWI76_RS03975 at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.098 kb on + strand at 823.101 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.106 kb on - strand at 823.109 kb on + strand at 823.118 kb on - strand at 823.222 kb on + strand at 823.222 kb on + strand at 823.222 kb on + strand at 823.222 kb on + strand at 823.230 kb on - strand at 823.230 kb on - strand at 823.230 kb on - strand at 823.230 kb on - strand at 823.233 kb on + strand at 823.235 kb on + strand at 823.239 kb on + strand at 823.241 kb on - strand at 823.244 kb on + strand at 823.246 kb on - strand at 823.247 kb on - strand at 823.247 kb on - strand at 823.247 kb on - strand at 823.247 kb on - strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.249 kb on + strand at 823.257 kb on - strand at 823.257 kb on - strand at 823.257 kb on - strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.259 kb on + strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.267 kb on - strand at 823.277 kb on - strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.280 kb on + strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.288 kb on - strand at 823.310 kb on - strand at 823.315 kb on + strand at 823.377 kb on - strand, within BWI76_RS03980 at 823.406 kb on + strand, within BWI76_RS03980 at 823.406 kb on + strand, within BWI76_RS03980 at 823.414 kb on - strand, within BWI76_RS03980 at 823.414 kb on - strand, within BWI76_RS03980 at 823.414 kb on - strand, within BWI76_RS03980 at 823.414 kb on - strand, within BWI76_RS03980 at 823.419 kb on - strand, within BWI76_RS03980 at 823.428 kb on + strand, within BWI76_RS03980 at 823.428 kb on + strand, within BWI76_RS03980 at 823.472 kb on + strand, within BWI76_RS03980 at 823.474 kb on + strand, within BWI76_RS03980 at 823.481 kb on - strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.484 kb on + strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.492 kb on - strand, within BWI76_RS03980 at 823.519 kb on + strand, within BWI76_RS03980 at 823.524 kb on - strand, within BWI76_RS03980 at 823.526 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.529 kb on + strand, within BWI76_RS03980 at 823.536 kb on + strand, within BWI76_RS03980 at 823.536 kb on + strand, within BWI76_RS03980 at 823.537 kb on - strand, within BWI76_RS03980 at 823.537 kb on - strand, within BWI76_RS03980 at 823.537 kb on - strand, within BWI76_RS03980 at 823.537 kb on - strand, within BWI76_RS03980 at 823.537 kb on - strand, within BWI76_RS03980 at 823.543 kb on + strand, within BWI76_RS03980 at 823.547 kb on - strand, within BWI76_RS03980 at 823.557 kb on + strand, within BWI76_RS03980 at 823.565 kb on + strand, within BWI76_RS03980 at 823.608 kb on + strand, within BWI76_RS03980 at 823.608 kb on + strand, within BWI76_RS03980 at 823.608 kb on + strand, within BWI76_RS03980 at 823.611 kb on - strand, within BWI76_RS03980 at 823.616 kb on - strand, within BWI76_RS03980 at 823.622 kb on + strand, within BWI76_RS03980 at 823.630 kb on - strand, within BWI76_RS03980 at 823.661 kb on - strand, within BWI76_RS03980 at 823.663 kb on - strand, within BWI76_RS03980 at 823.687 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand at 823.723 kb on + strand, within BWI76_RS03980 at 823.723 kb on + strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.731 kb on - strand, within BWI76_RS03980 at 823.752 kb on - strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.754 kb on + strand, within BWI76_RS03980 at 823.762 kb on - strand, within BWI76_RS03980 at 823.762 kb on - strand, within BWI76_RS03980 at 823.762 kb on - strand, within BWI76_RS03980 at 823.762 kb on - strand, within BWI76_RS03980 at 823.763 kb on - strand, within BWI76_RS03980 at 823.764 kb on - strand, within BWI76_RS03980 at 823.799 kb on + strand, within BWI76_RS03980 at 823.799 kb on + strand, within BWI76_RS03980 at 823.799 kb on + strand, within BWI76_RS03980 at 823.799 kb on + strand, within BWI76_RS03980 at 823.812 kb on + strand, within BWI76_RS03980 at 823.825 kb on - strand, within BWI76_RS03980 at 823.834 kb on + strand, within BWI76_RS03980 at 823.844 kb on - strand, within BWI76_RS03980 at 823.852 kb on + strand, within BWI76_RS03980 at 823.854 kb on + strand, within BWI76_RS03980 at 823.854 kb on + strand, within BWI76_RS03980 at 823.860 kb on - strand, within BWI76_RS03980 at 823.901 kb on + strand, within BWI76_RS03980 at 823.976 kb on + strand, within BWI76_RS03980 at 823.994 kb on + strand, within BWI76_RS03980 at 824.047 kb on + strand, within BWI76_RS03980 at 824.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 821,214 + BWI76_RS03965 0.90 +0.6 821,327 - -0.6 821,357 + BWI76_RS03970 0.10 -0.4 821,450 + BWI76_RS03970 0.21 +0.5 821,703 - BWI76_RS03970 0.51 -1.3 821,723 + BWI76_RS03970 0.53 +5.5 821,802 + BWI76_RS03970 0.62 +0.4 821,817 - BWI76_RS03970 0.64 -2.3 821,866 - BWI76_RS03970 0.70 -1.6 821,881 + BWI76_RS03970 0.72 -0.2 822,038 + -0.2 822,161 - -0.4 822,379 + BWI76_RS03975 0.23 -0.2 822,440 + BWI76_RS03975 0.29 +0.6 822,501 - BWI76_RS03975 0.34 +0.9 822,644 - BWI76_RS03975 0.48 -1.0 822,727 + BWI76_RS03975 0.56 +0.5 822,964 - BWI76_RS03975 0.78 +0.3 822,966 - BWI76_RS03975 0.78 +0.9 823,008 - BWI76_RS03975 0.82 +1.3 823,008 - BWI76_RS03975 0.82 +4.8 823,014 - BWI76_RS03975 0.83 -0.2 823,043 + BWI76_RS03975 0.85 -0.5 823,044 + BWI76_RS03975 0.86 +1.8 823,044 + BWI76_RS03975 0.86 +1.1 823,052 - BWI76_RS03975 0.86 +1.4 823,052 - BWI76_RS03975 0.86 +0.0 823,052 - BWI76_RS03975 0.86 +0.2 823,052 - BWI76_RS03975 0.86 +0.6 823,052 - BWI76_RS03975 0.86 -0.8 823,052 - -0.3 823,052 - BWI76_RS03975 0.86 +0.4 823,052 - BWI76_RS03975 0.86 +0.5 823,062 - BWI76_RS03975 0.87 -0.1 823,062 - BWI76_RS03975 0.87 +0.2 823,063 + BWI76_RS03975 0.87 -0.4 823,069 + BWI76_RS03975 0.88 +0.5 823,071 - BWI76_RS03975 0.88 -0.7 823,085 - BWI76_RS03975 0.89 -0.4 823,088 + BWI76_RS03975 0.90 -0.6 823,098 + -1.1 823,098 + -0.1 823,098 + +1.5 823,098 + -0.1 823,098 + -0.4 823,098 + +0.9 823,098 + +1.3 823,098 + -0.4 823,098 + +1.2 823,098 + +1.5 823,098 + -0.7 823,101 - +0.0 823,106 - -0.6 823,106 - +0.5 823,106 - -0.4 823,106 - -0.4 823,106 - +1.5 823,106 - -1.2 823,109 + +1.8 823,118 - -0.6 823,222 + -0.6 823,222 + +1.9 823,222 + -0.8 823,222 + +1.5 823,230 - -0.3 823,230 - -0.5 823,230 - +0.2 823,230 - -0.0 823,233 + +0.5 823,235 + +0.0 823,239 + +0.5 823,241 - -0.1 823,244 + -0.1 823,246 - +0.7 823,247 - +3.0 823,247 - +0.8 823,247 - +0.1 823,247 - -0.3 823,249 + -0.2 823,249 + -0.7 823,249 + +0.3 823,249 + -0.1 823,249 + -0.1 823,249 + +0.7 823,249 + -0.7 823,249 + -0.7 823,257 - +0.1 823,257 - +2.9 823,257 - -0.3 823,259 + -0.1 823,259 + -0.7 823,259 + +0.9 823,259 + +0.0 823,259 + -0.2 823,259 + -1.2 823,259 + -0.7 823,267 - -0.1 823,267 - +0.1 823,267 - -1.1 823,267 - -0.1 823,267 - -0.3 823,267 - -1.2 823,267 - -0.0 823,267 - +0.3 823,267 - -0.8 823,267 - -0.0 823,267 - +0.2 823,277 - +2.6 823,280 + -0.3 823,280 + +0.6 823,280 + -0.3 823,280 + -0.5 823,280 + +0.5 823,280 + -1.0 823,280 + -0.4 823,280 + -0.1 823,280 + -0.2 823,288 - -0.9 823,288 - -0.4 823,288 - +0.3 823,288 - -0.5 823,288 - -0.1 823,288 - +1.6 823,288 - +0.9 823,288 - +0.4 823,288 - +1.0 823,288 - -0.0 823,288 - -0.7 823,288 - -1.2 823,288 - -1.5 823,288 - -0.8 823,288 - -1.3 823,288 - -0.1 823,288 - -1.2 823,288 - +0.3 823,310 - -0.6 823,315 + -0.6 823,377 - BWI76_RS03980 0.16 -1.0 823,406 + BWI76_RS03980 0.19 -0.8 823,406 + BWI76_RS03980 0.19 -1.0 823,414 - BWI76_RS03980 0.20 -0.9 823,414 - BWI76_RS03980 0.20 -0.8 823,414 - BWI76_RS03980 0.20 -1.4 823,414 - BWI76_RS03980 0.20 +0.1 823,419 - BWI76_RS03980 0.20 +1.9 823,428 + BWI76_RS03980 0.21 +0.7 823,428 + BWI76_RS03980 0.21 +0.7 823,472 + BWI76_RS03980 0.25 -0.6 823,474 + BWI76_RS03980 0.26 -0.1 823,481 - BWI76_RS03980 0.26 -0.2 823,484 + BWI76_RS03980 0.27 +0.3 823,484 + BWI76_RS03980 0.27 -1.0 823,484 + BWI76_RS03980 0.27 +0.9 823,484 + BWI76_RS03980 0.27 -2.1 823,484 + BWI76_RS03980 0.27 +0.1 823,484 + BWI76_RS03980 0.27 +0.6 823,484 + BWI76_RS03980 0.27 -0.3 823,484 + BWI76_RS03980 0.27 +0.3 823,484 + BWI76_RS03980 0.27 -1.5 823,484 + BWI76_RS03980 0.27 -0.2 823,484 + BWI76_RS03980 0.27 -1.3 823,484 + BWI76_RS03980 0.27 +0.3 823,492 - BWI76_RS03980 0.27 +1.3 823,492 - BWI76_RS03980 0.27 -0.8 823,492 - BWI76_RS03980 0.27 +0.1 823,492 - BWI76_RS03980 0.27 -1.0 823,492 - BWI76_RS03980 0.27 +0.1 823,492 - BWI76_RS03980 0.27 -0.3 823,519 + BWI76_RS03980 0.30 -1.1 823,524 - BWI76_RS03980 0.31 -1.7 823,526 + BWI76_RS03980 0.31 +0.8 823,529 + BWI76_RS03980 0.31 +0.5 823,529 + BWI76_RS03980 0.31 -0.9 823,529 + BWI76_RS03980 0.31 -1.2 823,529 + BWI76_RS03980 0.31 +1.9 823,529 + BWI76_RS03980 0.31 -1.5 823,529 + BWI76_RS03980 0.31 +0.5 823,529 + BWI76_RS03980 0.31 +2.1 823,529 + BWI76_RS03980 0.31 -0.6 823,529 + BWI76_RS03980 0.31 -0.4 823,529 + BWI76_RS03980 0.31 -0.9 823,529 + BWI76_RS03980 0.31 +0.8 823,536 + BWI76_RS03980 0.32 -0.2 823,536 + BWI76_RS03980 0.32 +1.3 823,537 - BWI76_RS03980 0.32 +0.5 823,537 - BWI76_RS03980 0.32 +0.8 823,537 - BWI76_RS03980 0.32 -0.0 823,537 - BWI76_RS03980 0.32 -0.3 823,537 - BWI76_RS03980 0.32 -0.5 823,543 + BWI76_RS03980 0.32 +0.0 823,547 - BWI76_RS03980 0.33 +1.6 823,557 + BWI76_RS03980 0.34 -1.2 823,565 + BWI76_RS03980 0.35 +1.7 823,608 + BWI76_RS03980 0.39 -1.2 823,608 + BWI76_RS03980 0.39 -0.9 823,608 + BWI76_RS03980 0.39 +0.7 823,611 - BWI76_RS03980 0.39 -0.3 823,616 - BWI76_RS03980 0.40 +0.9 823,622 + BWI76_RS03980 0.40 -1.0 823,630 - BWI76_RS03980 0.41 +0.1 823,661 - BWI76_RS03980 0.44 +0.1 823,663 - BWI76_RS03980 0.44 -0.6 823,687 + BWI76_RS03980 0.47 +0.0 823,723 + BWI76_RS03980 0.50 -0.8 823,723 + BWI76_RS03980 0.50 -0.6 823,723 + BWI76_RS03980 0.50 -1.4 823,723 + BWI76_RS03980 0.50 -1.0 823,723 + BWI76_RS03980 0.50 -0.3 823,723 + BWI76_RS03980 0.50 +0.5 823,723 + BWI76_RS03980 0.50 -0.2 823,723 + +0.3 823,723 + BWI76_RS03980 0.50 +0.0 823,723 + BWI76_RS03980 0.50 +1.1 823,731 - BWI76_RS03980 0.51 +0.4 823,731 - BWI76_RS03980 0.51 -0.2 823,731 - BWI76_RS03980 0.51 +0.2 823,731 - BWI76_RS03980 0.51 +0.2 823,731 - BWI76_RS03980 0.51 -0.5 823,731 - BWI76_RS03980 0.51 +1.0 823,731 - BWI76_RS03980 0.51 -0.1 823,731 - BWI76_RS03980 0.51 -1.0 823,731 - BWI76_RS03980 0.51 -0.0 823,731 - BWI76_RS03980 0.51 +0.5 823,752 - BWI76_RS03980 0.53 -0.7 823,754 + BWI76_RS03980 0.53 +1.5 823,754 + BWI76_RS03980 0.53 +0.9 823,754 + BWI76_RS03980 0.53 +2.5 823,754 + BWI76_RS03980 0.53 +2.5 823,754 + BWI76_RS03980 0.53 -0.3 823,754 + BWI76_RS03980 0.53 -0.5 823,762 - BWI76_RS03980 0.54 +0.4 823,762 - BWI76_RS03980 0.54 -0.1 823,762 - BWI76_RS03980 0.54 -0.9 823,762 - BWI76_RS03980 0.54 +0.4 823,763 - BWI76_RS03980 0.54 -1.5 823,764 - BWI76_RS03980 0.54 +0.6 823,799 + BWI76_RS03980 0.58 -0.6 823,799 + BWI76_RS03980 0.58 +0.7 823,799 + BWI76_RS03980 0.58 +0.5 823,799 + BWI76_RS03980 0.58 +0.0 823,812 + BWI76_RS03980 0.59 -1.2 823,825 - BWI76_RS03980 0.60 -0.6 823,834 + BWI76_RS03980 0.61 +0.3 823,844 - BWI76_RS03980 0.62 -0.9 823,852 + BWI76_RS03980 0.63 +1.0 823,854 + BWI76_RS03980 0.63 -0.2 823,854 + BWI76_RS03980 0.63 -0.1 823,860 - BWI76_RS03980 0.64 -1.4 823,901 + BWI76_RS03980 0.68 -2.0 823,976 + BWI76_RS03980 0.75 -1.0 823,994 + BWI76_RS03980 0.77 -0.3 824,047 + BWI76_RS03980 0.82 +0.7 824,161 + -0.7
Or see this region's nucleotide sequence