Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02955 and BWI76_RS02960 are separated by 198 nucleotides BWI76_RS02960 and BWI76_RS02965 are separated by 52 nucleotides
BWI76_RS02955: BWI76_RS02955 - PTS system, cellobiose-specific IIC component, at 604,097 to 605,453
_RS02955
BWI76_RS02960: BWI76_RS02960 - glucohydrolase, at 605,652 to 607,307
_RS02960
BWI76_RS02965: BWI76_RS02965 - PTS trehalose transporter subunit IIBC, at 607,360 to 608,778
_RS02965
Position (kb) 605
606
607
608 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 604.697 kb on - strand, within BWI76_RS02955 at 604.762 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.842 kb on + strand, within BWI76_RS02955 at 604.850 kb on - strand, within BWI76_RS02955 at 604.886 kb on - strand, within BWI76_RS02955 at 604.922 kb on - strand, within BWI76_RS02955 at 604.975 kb on + strand, within BWI76_RS02955 at 605.048 kb on - strand, within BWI76_RS02955 at 605.309 kb on + strand, within BWI76_RS02955 at 605.422 kb on + strand at 605.455 kb on + strand at 605.597 kb on + strand at 605.604 kb on + strand at 605.604 kb on + strand at 605.636 kb on - strand at 605.690 kb on + strand at 607.490 kb on + strand at 607.733 kb on + strand, within BWI76_RS02965 at 607.813 kb on + strand, within BWI76_RS02965 at 607.883 kb on - strand at 607.907 kb on + strand, within BWI76_RS02965 at 607.912 kb on + strand, within BWI76_RS02965 at 607.915 kb on - strand, within BWI76_RS02965 at 608.178 kb on + strand, within BWI76_RS02965
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 604,697 - BWI76_RS02955 0.44 +0.7 604,762 + BWI76_RS02955 0.49 +8.0 604,842 + BWI76_RS02955 0.55 -0.1 604,842 + BWI76_RS02955 0.55 +0.5 604,850 - BWI76_RS02955 0.55 -0.2 604,886 - BWI76_RS02955 0.58 -0.2 604,922 - BWI76_RS02955 0.61 -0.2 604,975 + BWI76_RS02955 0.65 +0.4 605,048 - BWI76_RS02955 0.70 +1.1 605,309 + BWI76_RS02955 0.89 -1.1 605,422 + +0.0 605,455 + -0.6 605,597 + -0.3 605,604 + -0.3 605,604 + +0.2 605,636 - -0.6 605,690 + -0.8 607,490 + +1.8 607,733 + BWI76_RS02965 0.26 -0.5 607,813 + BWI76_RS02965 0.32 +0.2 607,883 - +3.5 607,907 + BWI76_RS02965 0.39 -0.4 607,912 + BWI76_RS02965 0.39 -0.5 607,915 - BWI76_RS02965 0.39 -1.6 608,178 + BWI76_RS02965 0.58 -0.1
Or see this region's nucleotide sequence