Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22405 and BWI76_RS22410 are separated by 23 nucleotides BWI76_RS22410 and BWI76_RS22415 are separated by 207 nucleotides BWI76_RS22415 and BWI76_RS22420 are separated by 56 nucleotides
BWI76_RS22405: BWI76_RS22405 - PTS cellobiose transporter subunit IIC, at 4,672,180 to 4,673,502
_RS22405
BWI76_RS22410: BWI76_RS22410 - PTS lactose/cellobiose transporter subunit IIA, at 4,673,526 to 4,673,840
_RS22410
BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962
_RS22415
BWI76_RS22420: BWI76_RS22420 - LacI family transcriptional regulator, at 4,675,019 to 4,675,981
_RS22420
Position (kb)
4674
4675 Strain fitness (log2 ratio)
-2
-1
0
1 at 4673.243 kb on + strand, within BWI76_RS22405 at 4673.258 kb on + strand, within BWI76_RS22405 at 4673.374 kb on + strand at 4673.511 kb on + strand at 4673.603 kb on - strand, within BWI76_RS22410 at 4673.605 kb on + strand, within BWI76_RS22410 at 4673.613 kb on - strand, within BWI76_RS22410 at 4673.778 kb on - strand, within BWI76_RS22410 at 4673.851 kb on + strand at 4673.938 kb on + strand at 4674.152 kb on - strand, within BWI76_RS22415 at 4674.162 kb on - strand at 4674.188 kb on + strand, within BWI76_RS22415 at 4674.196 kb on - strand, within BWI76_RS22415 at 4674.242 kb on + strand, within BWI76_RS22415 at 4674.381 kb on - strand, within BWI76_RS22415 at 4674.629 kb on + strand, within BWI76_RS22415 at 4674.744 kb on - strand, within BWI76_RS22415 at 4674.794 kb on + strand, within BWI76_RS22415 at 4674.802 kb on - strand, within BWI76_RS22415 at 4674.832 kb on - strand, within BWI76_RS22415 at 4674.895 kb on - strand at 4674.948 kb on - strand at 4674.948 kb on - strand at 4674.948 kb on - strand at 4674.986 kb on - strand at 4674.989 kb on - strand at 4675.075 kb on - strand at 4675.132 kb on - strand, within BWI76_RS22420 at 4675.258 kb on + strand, within BWI76_RS22420
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,673,243 + BWI76_RS22405 0.80 +0.5 4,673,258 + BWI76_RS22405 0.81 +0.2 4,673,374 + -0.7 4,673,511 + +0.1 4,673,603 - BWI76_RS22410 0.24 +0.0 4,673,605 + BWI76_RS22410 0.25 -1.0 4,673,613 - BWI76_RS22410 0.28 +0.5 4,673,778 - BWI76_RS22410 0.80 -0.7 4,673,851 + -1.3 4,673,938 + +0.2 4,674,152 - BWI76_RS22415 0.11 -0.9 4,674,162 - +0.1 4,674,188 + BWI76_RS22415 0.15 -1.2 4,674,196 - BWI76_RS22415 0.16 +0.8 4,674,242 + BWI76_RS22415 0.21 -0.6 4,674,381 - BWI76_RS22415 0.36 -0.1 4,674,629 + BWI76_RS22415 0.63 -0.9 4,674,744 - BWI76_RS22415 0.76 +0.2 4,674,794 + BWI76_RS22415 0.82 -0.5 4,674,802 - BWI76_RS22415 0.82 -0.5 4,674,832 - BWI76_RS22415 0.86 -1.2 4,674,895 - +1.4 4,674,948 - +1.2 4,674,948 - -0.9 4,674,948 - -0.2 4,674,986 - +0.6 4,674,989 - -2.4 4,675,075 - -1.6 4,675,132 - BWI76_RS22420 0.12 -1.1 4,675,258 + BWI76_RS22420 0.25 -0.7
Or see this region's nucleotide sequence