Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19145 and BWI76_RS19150 overlap by 4 nucleotides BWI76_RS19150 and BWI76_RS19155 are separated by 12 nucleotides BWI76_RS19155 and BWI76_RS19160 are separated by 714 nucleotides
BWI76_RS19145: BWI76_RS19145 - formate dehydrogenase cytochrome b556 subunit, at 3,981,004 to 3,981,633
_RS19145
BWI76_RS19150: BWI76_RS19150 - formate dehydrogenase subunit beta, at 3,981,630 to 3,982,532
_RS19150
BWI76_RS19155: BWI76_RS19155 - formate dehydrogenase-N subunit alpha, at 3,982,545 to 3,985,595
_RS19155
BWI76_RS19160: BWI76_RS19160 - histidine kinase, at 3,986,310 to 3,988,217
_RS19160
Position (kb)
3982
3983
3984
3985
3986 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3982.721 kb on + strand at 3982.783 kb on - strand at 3982.820 kb on - strand at 3982.962 kb on + strand, within BWI76_RS19155 at 3983.019 kb on - strand, within BWI76_RS19155 at 3983.094 kb on + strand, within BWI76_RS19155 at 3983.174 kb on - strand, within BWI76_RS19155 at 3983.307 kb on + strand, within BWI76_RS19155 at 3983.410 kb on + strand, within BWI76_RS19155 at 3983.489 kb on + strand, within BWI76_RS19155 at 3983.497 kb on - strand, within BWI76_RS19155 at 3983.539 kb on - strand, within BWI76_RS19155 at 3984.224 kb on + strand, within BWI76_RS19155 at 3984.232 kb on - strand, within BWI76_RS19155 at 3984.271 kb on - strand, within BWI76_RS19155 at 3984.527 kb on - strand, within BWI76_RS19155 at 3984.678 kb on - strand, within BWI76_RS19155 at 3984.693 kb on - strand, within BWI76_RS19155 at 3985.145 kb on - strand, within BWI76_RS19155 at 3985.254 kb on + strand, within BWI76_RS19155 at 3985.264 kb on - strand, within BWI76_RS19155 at 3985.415 kb on - strand at 3985.440 kb on - strand at 3985.587 kb on + strand at 3985.590 kb on - strand at 3985.597 kb on - strand at 3985.613 kb on - strand at 3985.614 kb on - strand at 3985.734 kb on + strand at 3985.742 kb on - strand at 3985.742 kb on - strand at 3985.756 kb on + strand at 3985.756 kb on + strand at 3985.764 kb on - strand at 3985.764 kb on - strand at 3985.764 kb on - strand at 3985.798 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.800 kb on + strand at 3985.801 kb on - strand at 3985.801 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.808 kb on - strand at 3985.810 kb on + strand at 3985.810 kb on + strand at 3985.812 kb on + strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.818 kb on - strand at 3985.820 kb on - strand at 3985.825 kb on + strand at 3985.831 kb on + strand at 3985.839 kb on - strand at 3985.844 kb on - strand at 3985.844 kb on - strand at 3985.854 kb on - strand at 3985.879 kb on - strand at 3985.912 kb on - strand at 3985.981 kb on + strand at 3985.998 kb on - strand at 3986.058 kb on + strand at 3986.063 kb on + strand at 3986.063 kb on + strand at 3986.063 kb on + strand at 3986.066 kb on - strand at 3986.071 kb on - strand at 3986.071 kb on - strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.073 kb on + strand at 3986.081 kb on - strand at 3986.081 kb on - strand at 3986.081 kb on - strand at 3986.101 kb on - strand at 3986.118 kb on + strand at 3986.118 kb on + strand at 3986.126 kb on - strand at 3986.126 kb on - strand at 3986.128 kb on + strand at 3986.133 kb on + strand at 3986.136 kb on - strand at 3986.136 kb on - strand at 3986.138 kb on + strand at 3986.138 kb on + strand at 3986.141 kb on - strand at 3986.146 kb on - strand at 3986.162 kb on + strand at 3986.163 kb on + strand at 3986.163 kb on + strand at 3986.168 kb on + strand at 3986.170 kb on - strand at 3986.171 kb on - strand at 3986.186 kb on + strand at 3986.187 kb on + strand at 3986.194 kb on - strand at 3986.195 kb on - strand at 3986.200 kb on + strand at 3986.218 kb on - strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.231 kb on + strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.239 kb on - strand at 3986.250 kb on + strand at 3986.300 kb on + strand at 3986.308 kb on - strand at 3986.331 kb on + strand at 3986.341 kb on - strand at 3986.344 kb on - strand at 3986.353 kb on + strand at 3986.369 kb on + strand at 3986.380 kb on + strand at 3986.396 kb on - strand at 3986.400 kb on + strand at 3986.408 kb on - strand at 3986.444 kb on + strand at 3986.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,982,721 + +0.1 3,982,783 - -0.0 3,982,820 - -1.9 3,982,962 + BWI76_RS19155 0.14 +0.0 3,983,019 - BWI76_RS19155 0.16 +0.5 3,983,094 + BWI76_RS19155 0.18 -0.5 3,983,174 - BWI76_RS19155 0.21 +0.3 3,983,307 + BWI76_RS19155 0.25 -2.5 3,983,410 + BWI76_RS19155 0.28 -0.6 3,983,489 + BWI76_RS19155 0.31 +3.4 3,983,497 - BWI76_RS19155 0.31 -0.8 3,983,539 - BWI76_RS19155 0.33 +1.0 3,984,224 + BWI76_RS19155 0.55 -0.3 3,984,232 - BWI76_RS19155 0.55 -0.2 3,984,271 - BWI76_RS19155 0.57 +0.6 3,984,527 - BWI76_RS19155 0.65 +0.2 3,984,678 - BWI76_RS19155 0.70 +0.5 3,984,693 - BWI76_RS19155 0.70 -0.4 3,985,145 - BWI76_RS19155 0.85 +7.4 3,985,254 + BWI76_RS19155 0.89 -0.7 3,985,264 - BWI76_RS19155 0.89 +0.6 3,985,415 - -0.8 3,985,440 - -0.3 3,985,587 + +0.0 3,985,590 - +0.8 3,985,597 - +0.3 3,985,613 - +0.0 3,985,614 - -0.0 3,985,734 + -0.5 3,985,742 - +2.7 3,985,742 - +0.1 3,985,756 + +0.3 3,985,756 + +0.1 3,985,764 - -0.1 3,985,764 - -0.7 3,985,764 - -0.8 3,985,798 + +1.0 3,985,800 + -0.4 3,985,800 + +1.6 3,985,800 + +0.6 3,985,800 + -0.5 3,985,801 - +0.2 3,985,801 - +1.6 3,985,808 - -0.5 3,985,808 - +0.4 3,985,808 - -0.7 3,985,808 - +0.6 3,985,808 - -1.2 3,985,808 - +2.3 3,985,808 - -1.1 3,985,808 - -0.2 3,985,808 - +0.7 3,985,808 - -0.9 3,985,808 - -1.3 3,985,810 + +0.1 3,985,810 + +2.4 3,985,812 + -0.1 3,985,818 - -1.9 3,985,818 - -1.4 3,985,818 - +1.0 3,985,818 - -0.5 3,985,820 - +0.4 3,985,825 + +0.5 3,985,831 + +1.6 3,985,839 - -0.6 3,985,844 - +0.2 3,985,844 - -0.4 3,985,854 - +0.6 3,985,879 - -0.5 3,985,912 - -0.1 3,985,981 + -0.8 3,985,998 - +0.4 3,986,058 + -2.4 3,986,063 + +0.5 3,986,063 + -0.0 3,986,063 + +0.8 3,986,066 - -1.2 3,986,071 - -1.1 3,986,071 - -0.6 3,986,073 + -0.1 3,986,073 + +0.7 3,986,073 + -0.2 3,986,073 + -0.0 3,986,073 + +0.8 3,986,081 - +0.1 3,986,081 - +2.6 3,986,081 - -0.1 3,986,101 - +0.3 3,986,118 + +0.7 3,986,118 + -0.7 3,986,126 - -0.8 3,986,126 - +0.9 3,986,128 + -0.6 3,986,133 + -0.4 3,986,136 - -1.4 3,986,136 - +0.6 3,986,138 + -0.4 3,986,138 + +0.3 3,986,141 - -1.1 3,986,146 - +0.4 3,986,162 + -0.4 3,986,163 + -0.4 3,986,163 + -0.1 3,986,168 + +1.2 3,986,170 - -0.3 3,986,171 - -0.1 3,986,186 + +1.6 3,986,187 + +1.9 3,986,194 - +0.0 3,986,195 - -1.0 3,986,200 + -0.0 3,986,218 - -0.4 3,986,231 + -0.2 3,986,231 + +0.0 3,986,231 + +0.7 3,986,231 + -0.6 3,986,239 - +0.0 3,986,239 - +1.1 3,986,239 - +0.3 3,986,239 - +0.1 3,986,239 - +0.0 3,986,250 + -0.6 3,986,300 + +0.3 3,986,308 - -0.5 3,986,331 + +0.4 3,986,341 - +1.0 3,986,344 - -0.6 3,986,353 + -0.7 3,986,369 + +0.1 3,986,380 + -1.3 3,986,396 - -1.8 3,986,400 + +0.1 3,986,408 - -0.7 3,986,444 + -0.5 3,986,454 - +2.5
Or see this region's nucleotide sequence