Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16585

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16580 and BWI76_RS16585 are separated by 8 nucleotidesBWI76_RS16585 and BWI76_RS16590 overlap by 4 nucleotides BWI76_RS16580: BWI76_RS16580 - ubiquinol oxidase subunit II, at 3,434,038 to 3,435,048 _RS16580 BWI76_RS16585: BWI76_RS16585 - trehalose synthase, at 3,435,057 to 3,436,682 _RS16585 BWI76_RS16590: BWI76_RS16590 - short-chain dehydrogenase, at 3,436,679 to 3,437,668 _RS16590 Position (kb) 3435 3436 3437Strain fitness (log2 ratio) -1 0 1 2 3at 3434.224 kb on - strand, within BWI76_RS16580at 3434.417 kb on + strand, within BWI76_RS16580at 3434.425 kb on - strand, within BWI76_RS16580at 3434.464 kb on - strand, within BWI76_RS16580at 3434.785 kb on - strand, within BWI76_RS16580at 3434.796 kb on + strand, within BWI76_RS16580at 3434.990 kb on - strandat 3435.161 kb on + strandat 3435.207 kb on + strandat 3435.265 kb on - strand, within BWI76_RS16585at 3435.490 kb on + strand, within BWI76_RS16585at 3435.671 kb on + strand, within BWI76_RS16585at 3435.757 kb on - strand, within BWI76_RS16585at 3435.930 kb on + strand, within BWI76_RS16585at 3436.004 kb on - strand, within BWI76_RS16585at 3436.112 kb on + strand, within BWI76_RS16585at 3436.565 kb on - strandat 3436.971 kb on - strand, within BWI76_RS16590at 3437.313 kb on + strand, within BWI76_RS16590at 3437.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,434,224 - BWI76_RS16580 0.18 -1.7
3,434,417 + BWI76_RS16580 0.37 +0.5
3,434,425 - BWI76_RS16580 0.38 +1.1
3,434,464 - BWI76_RS16580 0.42 -0.6
3,434,785 - BWI76_RS16580 0.74 -0.2
3,434,796 + BWI76_RS16580 0.75 -0.5
3,434,990 - -0.3
3,435,161 + +0.4
3,435,207 + +1.1
3,435,265 - BWI76_RS16585 0.13 +0.0
3,435,490 + BWI76_RS16585 0.27 -0.7
3,435,671 + BWI76_RS16585 0.38 +0.4
3,435,757 - BWI76_RS16585 0.43 -0.0
3,435,930 + BWI76_RS16585 0.54 +0.5
3,436,004 - BWI76_RS16585 0.58 +0.7
3,436,112 + BWI76_RS16585 0.65 -0.2
3,436,565 - -0.0
3,436,971 - BWI76_RS16590 0.29 +3.1
3,437,313 + BWI76_RS16590 0.64 -0.6
3,437,617 - -0.5

Or see this region's nucleotide sequence