Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10965

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS10960 and BWI76_RS10965 are separated by 209 nucleotidesBWI76_RS10965 and BWI76_RS10970 overlap by 15 nucleotidesBWI76_RS10970 and BWI76_RS10975 are separated by 73 nucleotides BWI76_RS10960: BWI76_RS10960 - lipid A biosynthesis lauroyl acyltransferase, at 2,313,862 to 2,314,782 _RS10960 BWI76_RS10965: BWI76_RS10965 - sulfurtransferase, at 2,314,992 to 2,316,056 _RS10965 BWI76_RS10970: BWI76_RS10970 - DUF2770 domain-containing protein, at 2,316,042 to 2,316,155 _RS10970 BWI76_RS10975: BWI76_RS10975 - N-methyltryptophan oxidase, at 2,316,229 to 2,317,347 _RS10975 Position (kb) 2314 2315 2316 2317Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2314.790 kb on - strandat 2314.790 kb on - strandat 2314.790 kb on - strandat 2314.931 kb on - strandat 2314.984 kb on + strandat 2314.992 kb on - strandat 2315.034 kb on - strandat 2315.050 kb on + strandat 2315.050 kb on + strandat 2315.058 kb on - strandat 2315.121 kb on + strandat 2315.138 kb on + strand, within BWI76_RS10965at 2315.151 kb on + strand, within BWI76_RS10965at 2315.205 kb on + strand, within BWI76_RS10965at 2315.306 kb on + strand, within BWI76_RS10965at 2315.320 kb on + strand, within BWI76_RS10965at 2315.909 kb on - strand, within BWI76_RS10965at 2316.539 kb on - strand, within BWI76_RS10975at 2316.610 kb on - strand, within BWI76_RS10975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
2,314,790 - -0.2
2,314,790 - +0.2
2,314,790 - -0.7
2,314,931 - -1.2
2,314,984 + +0.1
2,314,992 - -0.5
2,315,034 - +0.3
2,315,050 + +0.6
2,315,050 + +0.6
2,315,058 - -1.7
2,315,121 + +1.0
2,315,138 + BWI76_RS10965 0.14 +0.2
2,315,151 + BWI76_RS10965 0.15 -1.1
2,315,205 + BWI76_RS10965 0.20 -2.9
2,315,306 + BWI76_RS10965 0.29 -0.6
2,315,320 + BWI76_RS10965 0.31 -0.2
2,315,909 - BWI76_RS10965 0.86 -0.2
2,316,539 - BWI76_RS10975 0.28 +3.5
2,316,610 - BWI76_RS10975 0.34 -1.0

Or see this region's nucleotide sequence