Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03355 and BWI76_RS03360 are separated by 51 nucleotides BWI76_RS03360 and BWI76_RS03365 are separated by 311 nucleotides
BWI76_RS03355: BWI76_RS03355 - hypothetical protein, at 691,229 to 692,290
_RS03355
BWI76_RS03360: BWI76_RS03360 - IS3 family transposase, at 692,342 to 693,549
_RS03360
BWI76_RS03365: BWI76_RS03365 - N-6 DNA methylase, at 693,861 to 694,754
_RS03365
Position (kb) 692
693
694 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 691.360 kb on - strand, within BWI76_RS03355 at 691.411 kb on + strand, within BWI76_RS03355 at 691.483 kb on - strand, within BWI76_RS03355 at 691.519 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.599 kb on + strand, within BWI76_RS03355 at 691.606 kb on + strand, within BWI76_RS03355 at 691.607 kb on - strand, within BWI76_RS03355 at 691.607 kb on - strand, within BWI76_RS03355 at 691.607 kb on - strand, within BWI76_RS03355 at 691.607 kb on - strand, within BWI76_RS03355 at 691.607 kb on - strand, within BWI76_RS03355 at 691.614 kb on - strand, within BWI76_RS03355 at 691.614 kb on - strand at 691.619 kb on + strand, within BWI76_RS03355 at 691.708 kb on + strand, within BWI76_RS03355 at 691.708 kb on + strand, within BWI76_RS03355 at 691.709 kb on + strand, within BWI76_RS03355 at 691.709 kb on + strand, within BWI76_RS03355 at 691.717 kb on - strand at 691.726 kb on + strand, within BWI76_RS03355 at 691.727 kb on + strand at 691.785 kb on + strand, within BWI76_RS03355 at 691.785 kb on + strand, within BWI76_RS03355 at 691.786 kb on + strand, within BWI76_RS03355 at 691.793 kb on - strand, within BWI76_RS03355 at 691.808 kb on - strand, within BWI76_RS03355 at 691.810 kb on + strand, within BWI76_RS03355 at 691.810 kb on + strand at 691.811 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.816 kb on + strand, within BWI76_RS03355 at 691.818 kb on - strand, within BWI76_RS03355 at 691.824 kb on - strand, within BWI76_RS03355 at 691.824 kb on - strand, within BWI76_RS03355 at 691.824 kb on - strand, within BWI76_RS03355 at 691.824 kb on - strand, within BWI76_RS03355 at 691.832 kb on + strand, within BWI76_RS03355 at 691.832 kb on + strand, within BWI76_RS03355 at 691.851 kb on - strand, within BWI76_RS03355 at 691.904 kb on + strand, within BWI76_RS03355 at 691.904 kb on + strand, within BWI76_RS03355 at 691.904 kb on + strand, within BWI76_RS03355 at 691.904 kb on + strand, within BWI76_RS03355 at 691.904 kb on + strand, within BWI76_RS03355 at 691.909 kb on + strand, within BWI76_RS03355 at 691.912 kb on - strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.921 kb on + strand, within BWI76_RS03355 at 691.953 kb on + strand, within BWI76_RS03355 at 691.968 kb on + strand, within BWI76_RS03355 at 691.968 kb on + strand, within BWI76_RS03355 at 691.976 kb on - strand, within BWI76_RS03355 at 691.991 kb on + strand, within BWI76_RS03355 at 691.991 kb on + strand at 691.991 kb on + strand, within BWI76_RS03355 at 691.999 kb on + strand, within BWI76_RS03355 at 692.010 kb on - strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.018 kb on + strand, within BWI76_RS03355 at 692.026 kb on - strand, within BWI76_RS03355 at 692.026 kb on - strand, within BWI76_RS03355 at 692.026 kb on - strand, within BWI76_RS03355 at 692.026 kb on - strand, within BWI76_RS03355 at 692.026 kb on - strand, within BWI76_RS03355 at 692.045 kb on - strand, within BWI76_RS03355 at 692.077 kb on + strand, within BWI76_RS03355 at 692.212 kb on + strand at 692.212 kb on + strand at 692.218 kb on + strand at 692.225 kb on + strand at 692.225 kb on + strand at 692.234 kb on + strand at 692.237 kb on + strand at 692.237 kb on + strand at 692.245 kb on - strand at 692.245 kb on - strand at 692.248 kb on - strand at 692.264 kb on - strand at 692.266 kb on - strand at 692.268 kb on + strand at 692.269 kb on + strand at 692.269 kb on + strand at 692.269 kb on - strand at 692.279 kb on - strand at 692.322 kb on - strand at 692.329 kb on + strand at 692.329 kb on - strand at 692.331 kb on + strand at 692.353 kb on - strand at 692.384 kb on + strand at 692.392 kb on + strand at 692.392 kb on - strand at 692.398 kb on - strand at 692.400 kb on + strand at 692.447 kb on + strand at 692.455 kb on - strand at 692.460 kb on - strand at 692.516 kb on + strand, within BWI76_RS03360 at 692.524 kb on - strand, within BWI76_RS03360 at 692.546 kb on + strand, within BWI76_RS03360 at 692.556 kb on + strand, within BWI76_RS03360 at 692.556 kb on + strand, within BWI76_RS03360 at 692.564 kb on - strand, within BWI76_RS03360 at 692.567 kb on - strand, within BWI76_RS03360 at 692.591 kb on + strand, within BWI76_RS03360 at 692.618 kb on - strand, within BWI76_RS03360 at 692.618 kb on - strand, within BWI76_RS03360 at 692.707 kb on - strand, within BWI76_RS03360 at 692.733 kb on - strand, within BWI76_RS03360 at 692.744 kb on + strand, within BWI76_RS03360 at 692.752 kb on - strand, within BWI76_RS03360 at 692.753 kb on - strand, within BWI76_RS03360 at 692.776 kb on - strand, within BWI76_RS03360 at 692.778 kb on + strand, within BWI76_RS03360 at 692.832 kb on - strand, within BWI76_RS03360 at 692.855 kb on - strand, within BWI76_RS03360 at 693.026 kb on + strand, within BWI76_RS03360 at 693.098 kb on + strand, within BWI76_RS03360 at 693.165 kb on - strand at 693.167 kb on - strand, within BWI76_RS03360 at 693.173 kb on + strand, within BWI76_RS03360 at 693.191 kb on + strand, within BWI76_RS03360 at 693.249 kb on - strand, within BWI76_RS03360 at 693.323 kb on + strand, within BWI76_RS03360 at 693.452 kb on - strand at 693.473 kb on - strand at 693.476 kb on - strand at 693.488 kb on - strand at 693.506 kb on + strand at 693.514 kb on - strand at 693.514 kb on - strand at 693.522 kb on + strand at 693.522 kb on + strand at 693.566 kb on + strand at 693.568 kb on - strand at 693.579 kb on + strand at 693.615 kb on + strand at 693.623 kb on - strand at 693.680 kb on - strand at 693.682 kb on + strand at 693.690 kb on - strand at 693.706 kb on + strand at 693.706 kb on + strand at 693.706 kb on + strand at 693.714 kb on - strand at 693.714 kb on - strand at 693.714 kb on - strand at 693.804 kb on + strand at 693.834 kb on + strand at 693.887 kb on - strand at 693.888 kb on - strand at 693.913 kb on - strand at 693.934 kb on - strand at 693.988 kb on + strand, within BWI76_RS03365 at 693.996 kb on - strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.002 kb on + strand, within BWI76_RS03365 at 694.010 kb on - strand, within BWI76_RS03365 at 694.010 kb on - strand, within BWI76_RS03365 at 694.021 kb on + strand, within BWI76_RS03365 at 694.029 kb on - strand, within BWI76_RS03365 at 694.061 kb on + strand, within BWI76_RS03365 at 694.061 kb on + strand, within BWI76_RS03365 at 694.069 kb on - strand, within BWI76_RS03365 at 694.109 kb on + strand, within BWI76_RS03365 at 694.122 kb on - strand, within BWI76_RS03365 at 694.122 kb on - strand, within BWI76_RS03365 at 694.126 kb on + strand, within BWI76_RS03365 at 694.126 kb on + strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.134 kb on - strand, within BWI76_RS03365 at 694.137 kb on - strand, within BWI76_RS03365 at 694.138 kb on + strand, within BWI76_RS03365 at 694.146 kb on - strand, within BWI76_RS03365 at 694.156 kb on + strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.164 kb on - strand, within BWI76_RS03365 at 694.229 kb on + strand, within BWI76_RS03365 at 694.266 kb on + strand, within BWI76_RS03365 at 694.292 kb on + strand, within BWI76_RS03365 at 694.294 kb on + strand, within BWI76_RS03365 at 694.317 kb on - strand, within BWI76_RS03365 at 694.321 kb on + strand, within BWI76_RS03365 at 694.338 kb on - strand at 694.387 kb on + strand, within BWI76_RS03365 at 694.389 kb on + strand, within BWI76_RS03365 at 694.389 kb on + strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.397 kb on - strand, within BWI76_RS03365 at 694.410 kb on - strand, within BWI76_RS03365 at 694.474 kb on + strand, within BWI76_RS03365 at 694.482 kb on - strand, within BWI76_RS03365 at 694.495 kb on - strand at 694.509 kb on + strand, within BWI76_RS03365 at 694.509 kb on + strand, within BWI76_RS03365 at 694.515 kb on + strand, within BWI76_RS03365
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 691,360 - BWI76_RS03355 0.12 +0.9 691,411 + BWI76_RS03355 0.17 -0.5 691,483 - BWI76_RS03355 0.24 -0.6 691,519 + BWI76_RS03355 0.27 +0.2 691,599 + BWI76_RS03355 0.35 +1.7 691,599 + BWI76_RS03355 0.35 -0.7 691,599 + BWI76_RS03355 0.35 +0.6 691,599 + BWI76_RS03355 0.35 +1.7 691,599 + BWI76_RS03355 0.35 -1.3 691,599 + BWI76_RS03355 0.35 +0.5 691,599 + BWI76_RS03355 0.35 +0.1 691,599 + BWI76_RS03355 0.35 -1.7 691,599 + BWI76_RS03355 0.35 +1.3 691,599 + BWI76_RS03355 0.35 -0.5 691,606 + BWI76_RS03355 0.35 +1.4 691,607 - BWI76_RS03355 0.36 -1.1 691,607 - BWI76_RS03355 0.36 -0.1 691,607 - BWI76_RS03355 0.36 +0.4 691,607 - BWI76_RS03355 0.36 -0.2 691,607 - BWI76_RS03355 0.36 +1.1 691,614 - BWI76_RS03355 0.36 +0.3 691,614 - +1.1 691,619 + BWI76_RS03355 0.37 +1.3 691,708 + BWI76_RS03355 0.45 -0.1 691,708 + BWI76_RS03355 0.45 -0.1 691,709 + BWI76_RS03355 0.45 +0.8 691,709 + BWI76_RS03355 0.45 +1.2 691,717 - -1.2 691,726 + BWI76_RS03355 0.47 -0.5 691,727 + +0.3 691,785 + BWI76_RS03355 0.52 -1.7 691,785 + BWI76_RS03355 0.52 +0.5 691,786 + BWI76_RS03355 0.52 +1.1 691,793 - BWI76_RS03355 0.53 +0.1 691,808 - BWI76_RS03355 0.55 +2.3 691,810 + BWI76_RS03355 0.55 -0.9 691,810 + +1.7 691,811 + BWI76_RS03355 0.55 +0.9 691,816 + BWI76_RS03355 0.55 +0.8 691,816 + BWI76_RS03355 0.55 +0.7 691,816 + BWI76_RS03355 0.55 -0.8 691,816 + BWI76_RS03355 0.55 +2.0 691,816 + BWI76_RS03355 0.55 -0.0 691,816 + BWI76_RS03355 0.55 -1.9 691,816 + BWI76_RS03355 0.55 -1.9 691,816 + BWI76_RS03355 0.55 -1.5 691,818 - BWI76_RS03355 0.55 +1.6 691,824 - BWI76_RS03355 0.56 +1.3 691,824 - BWI76_RS03355 0.56 -1.0 691,824 - BWI76_RS03355 0.56 -1.2 691,824 - BWI76_RS03355 0.56 -1.3 691,832 + BWI76_RS03355 0.57 +0.1 691,832 + BWI76_RS03355 0.57 +6.3 691,851 - BWI76_RS03355 0.59 +1.7 691,904 + BWI76_RS03355 0.64 -0.0 691,904 + BWI76_RS03355 0.64 +0.1 691,904 + BWI76_RS03355 0.64 -0.1 691,904 + BWI76_RS03355 0.64 +0.7 691,904 + BWI76_RS03355 0.64 +0.3 691,909 + BWI76_RS03355 0.64 +0.3 691,912 - BWI76_RS03355 0.64 +0.5 691,921 + BWI76_RS03355 0.65 +0.2 691,921 + BWI76_RS03355 0.65 -0.3 691,921 + BWI76_RS03355 0.65 +0.5 691,921 + BWI76_RS03355 0.65 +0.5 691,921 + BWI76_RS03355 0.65 +0.2 691,921 + BWI76_RS03355 0.65 -1.2 691,953 + BWI76_RS03355 0.68 +1.0 691,968 + BWI76_RS03355 0.70 +1.7 691,968 + BWI76_RS03355 0.70 -0.9 691,976 - BWI76_RS03355 0.70 +0.1 691,991 + BWI76_RS03355 0.72 -1.6 691,991 + +2.4 691,991 + BWI76_RS03355 0.72 +0.7 691,999 + BWI76_RS03355 0.73 +0.9 692,010 - BWI76_RS03355 0.74 -1.4 692,018 + BWI76_RS03355 0.74 +1.4 692,018 + BWI76_RS03355 0.74 +1.4 692,018 + BWI76_RS03355 0.74 -1.5 692,018 + BWI76_RS03355 0.74 +0.2 692,018 + BWI76_RS03355 0.74 +4.5 692,018 + BWI76_RS03355 0.74 -2.7 692,018 + BWI76_RS03355 0.74 +1.1 692,018 + BWI76_RS03355 0.74 -1.3 692,018 + BWI76_RS03355 0.74 -0.7 692,018 + BWI76_RS03355 0.74 +0.3 692,018 + BWI76_RS03355 0.74 +1.5 692,018 + BWI76_RS03355 0.74 -0.2 692,018 + BWI76_RS03355 0.74 +0.6 692,018 + BWI76_RS03355 0.74 -1.0 692,026 - BWI76_RS03355 0.75 +0.7 692,026 - BWI76_RS03355 0.75 -0.7 692,026 - BWI76_RS03355 0.75 +2.5 692,026 - BWI76_RS03355 0.75 -0.2 692,026 - BWI76_RS03355 0.75 -0.2 692,045 - BWI76_RS03355 0.77 +0.2 692,077 + BWI76_RS03355 0.80 -0.3 692,212 + +0.0 692,212 + +0.4 692,218 + +0.6 692,225 + -0.9 692,225 + +1.4 692,234 + -0.2 692,237 + -0.7 692,237 + -0.3 692,245 - -0.8 692,245 - +0.2 692,248 - +2.2 692,264 - +0.1 692,266 - +2.7 692,268 + -0.3 692,269 + -0.1 692,269 + +2.7 692,269 - +1.3 692,279 - +1.8 692,322 - -0.5 692,329 + +1.2 692,329 - -1.2 692,331 + -0.7 692,353 - -0.4 692,384 + -0.7 692,392 + -0.3 692,392 - -0.8 692,398 - +0.6 692,400 + +1.5 692,447 + +0.5 692,455 - -0.2 692,460 - +1.7 692,516 + BWI76_RS03360 0.14 +0.0 692,524 - BWI76_RS03360 0.15 +2.2 692,546 + BWI76_RS03360 0.17 +4.0 692,556 + BWI76_RS03360 0.18 +0.4 692,556 + BWI76_RS03360 0.18 +0.5 692,564 - BWI76_RS03360 0.18 +0.0 692,567 - BWI76_RS03360 0.19 +1.2 692,591 + BWI76_RS03360 0.21 +1.3 692,618 - BWI76_RS03360 0.23 +0.0 692,618 - BWI76_RS03360 0.23 +0.3 692,707 - BWI76_RS03360 0.30 -0.1 692,733 - BWI76_RS03360 0.32 +0.8 692,744 + BWI76_RS03360 0.33 -0.5 692,752 - BWI76_RS03360 0.34 -1.6 692,753 - BWI76_RS03360 0.34 -0.1 692,776 - BWI76_RS03360 0.36 -1.9 692,778 + BWI76_RS03360 0.36 +0.3 692,832 - BWI76_RS03360 0.41 +1.3 692,855 - BWI76_RS03360 0.42 -0.5 693,026 + BWI76_RS03360 0.57 -0.7 693,098 + BWI76_RS03360 0.63 +1.2 693,165 - +3.7 693,167 - BWI76_RS03360 0.68 -0.7 693,173 + BWI76_RS03360 0.69 +0.4 693,191 + BWI76_RS03360 0.70 +0.7 693,249 - BWI76_RS03360 0.75 +0.2 693,323 + BWI76_RS03360 0.81 -0.9 693,452 - -0.3 693,473 - +0.4 693,476 - -0.1 693,488 - -0.4 693,506 + -1.0 693,514 - -0.3 693,514 - -0.6 693,522 + -1.0 693,522 + -1.4 693,566 + +0.9 693,568 - -0.8 693,579 + -0.3 693,615 + +0.3 693,623 - +3.4 693,680 - +0.5 693,682 + +1.1 693,690 - -0.3 693,706 + +0.3 693,706 + +0.2 693,706 + +1.1 693,714 - -0.3 693,714 - -0.4 693,714 - -1.6 693,804 + -0.6 693,834 + +0.3 693,887 - +1.0 693,888 - -0.1 693,913 - -0.1 693,934 - +1.7 693,988 + BWI76_RS03365 0.14 -1.6 693,996 - BWI76_RS03365 0.15 +0.0 694,002 + BWI76_RS03365 0.16 -0.3 694,002 + BWI76_RS03365 0.16 +0.1 694,002 + BWI76_RS03365 0.16 +0.9 694,010 - BWI76_RS03365 0.17 -0.4 694,010 - BWI76_RS03365 0.17 -0.3 694,021 + BWI76_RS03365 0.18 +3.2 694,029 - BWI76_RS03365 0.19 -1.1 694,061 + BWI76_RS03365 0.22 +0.4 694,061 + BWI76_RS03365 0.22 -0.7 694,069 - BWI76_RS03365 0.23 -0.3 694,109 + BWI76_RS03365 0.28 -0.1 694,122 - BWI76_RS03365 0.29 +0.0 694,122 - BWI76_RS03365 0.29 +0.7 694,126 + BWI76_RS03365 0.30 -0.4 694,126 + BWI76_RS03365 0.30 -0.4 694,134 - BWI76_RS03365 0.31 -0.5 694,134 - BWI76_RS03365 0.31 +1.0 694,134 - BWI76_RS03365 0.31 +4.4 694,134 - BWI76_RS03365 0.31 +0.3 694,134 - BWI76_RS03365 0.31 +0.7 694,137 - BWI76_RS03365 0.31 +0.4 694,138 + BWI76_RS03365 0.31 +0.5 694,146 - BWI76_RS03365 0.32 +1.5 694,156 + BWI76_RS03365 0.33 +0.8 694,164 - BWI76_RS03365 0.34 +0.1 694,164 - BWI76_RS03365 0.34 +0.2 694,164 - BWI76_RS03365 0.34 -0.4 694,229 + BWI76_RS03365 0.41 +0.4 694,266 + BWI76_RS03365 0.45 +0.7 694,292 + BWI76_RS03365 0.48 +0.2 694,294 + BWI76_RS03365 0.48 +1.1 694,317 - BWI76_RS03365 0.51 +0.2 694,321 + BWI76_RS03365 0.51 -2.5 694,338 - +0.7 694,387 + BWI76_RS03365 0.59 +0.9 694,389 + BWI76_RS03365 0.59 +1.3 694,389 + BWI76_RS03365 0.59 +0.3 694,397 - BWI76_RS03365 0.60 -1.2 694,397 - BWI76_RS03365 0.60 +0.3 694,397 - BWI76_RS03365 0.60 +0.4 694,410 - BWI76_RS03365 0.61 -0.2 694,474 + BWI76_RS03365 0.69 +2.2 694,482 - BWI76_RS03365 0.69 -1.0 694,495 - +0.1 694,509 + BWI76_RS03365 0.72 -0.4 694,509 + BWI76_RS03365 0.72 -0.2 694,515 + BWI76_RS03365 0.73 +0.4
Or see this region's nucleotide sequence