Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27130

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27125 and BWI76_RS27130 are separated by 10 nucleotidesBWI76_RS27130 and BWI76_RS27135 are separated by 107 nucleotides BWI76_RS27125: BWI76_RS27125 - sugar (glycoside-Pentoside-Hexuronide) transporter, at 5,628,463 to 5,629,863 _RS27125 BWI76_RS27130: BWI76_RS27130 - hypothetical protein, at 5,629,874 to 5,631,835 _RS27130 BWI76_RS27135: BWI76_RS27135 - selenocysteine-specific translation factor, at 5,631,943 to 5,633,784 _RS27135 Position (kb) 5629 5630 5631 5632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5628.903 kb on + strand, within BWI76_RS27125at 5628.956 kb on + strand, within BWI76_RS27125at 5628.964 kb on - strand, within BWI76_RS27125at 5629.047 kb on - strand, within BWI76_RS27125at 5629.063 kb on + strand, within BWI76_RS27125at 5629.063 kb on + strandat 5629.068 kb on + strand, within BWI76_RS27125at 5629.148 kb on + strand, within BWI76_RS27125at 5629.148 kb on + strand, within BWI76_RS27125at 5629.148 kb on + strand, within BWI76_RS27125at 5629.148 kb on + strand, within BWI76_RS27125at 5629.148 kb on + strand, within BWI76_RS27125at 5629.156 kb on - strand, within BWI76_RS27125at 5629.169 kb on + strand, within BWI76_RS27125at 5629.409 kb on + strandat 5629.522 kb on - strand, within BWI76_RS27125at 5629.550 kb on + strand, within BWI76_RS27125at 5629.607 kb on + strand, within BWI76_RS27125at 5629.607 kb on + strand, within BWI76_RS27125at 5629.615 kb on - strand, within BWI76_RS27125at 5629.719 kb on - strand, within BWI76_RS27125at 5629.733 kb on + strandat 5629.857 kb on + strandat 5629.857 kb on + strandat 5629.857 kb on + strandat 5629.857 kb on + strandat 5629.857 kb on + strandat 5629.857 kb on + strandat 5629.859 kb on + strandat 5629.865 kb on - strandat 5629.865 kb on - strandat 5629.865 kb on - strandat 5629.865 kb on - strandat 5629.865 kb on - strandat 5629.867 kb on - strandat 5629.970 kb on - strandat 5630.006 kb on + strandat 5630.046 kb on + strandat 5630.054 kb on - strandat 5630.197 kb on + strand, within BWI76_RS27130at 5630.199 kb on + strand, within BWI76_RS27130at 5630.253 kb on + strand, within BWI76_RS27130at 5630.284 kb on - strand, within BWI76_RS27130at 5630.377 kb on + strand, within BWI76_RS27130at 5630.379 kb on + strand, within BWI76_RS27130at 5630.563 kb on + strand, within BWI76_RS27130at 5630.617 kb on + strand, within BWI76_RS27130at 5630.759 kb on - strand, within BWI76_RS27130at 5630.815 kb on + strand, within BWI76_RS27130at 5630.836 kb on - strand, within BWI76_RS27130at 5630.966 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.968 kb on + strand, within BWI76_RS27130at 5630.976 kb on - strand, within BWI76_RS27130at 5630.976 kb on - strand, within BWI76_RS27130at 5631.084 kb on - strand, within BWI76_RS27130at 5631.137 kb on + strand, within BWI76_RS27130at 5631.170 kb on + strand, within BWI76_RS27130at 5631.177 kb on + strand, within BWI76_RS27130at 5631.177 kb on + strand, within BWI76_RS27130at 5631.185 kb on - strand, within BWI76_RS27130at 5631.291 kb on - strand, within BWI76_RS27130at 5631.311 kb on + strand, within BWI76_RS27130at 5631.312 kb on - strand, within BWI76_RS27130at 5631.461 kb on - strand, within BWI76_RS27130at 5631.515 kb on + strand, within BWI76_RS27130at 5631.596 kb on - strand, within BWI76_RS27130at 5631.805 kb on - strandat 5631.838 kb on - strandat 5631.844 kb on - strandat 5631.863 kb on - strandat 5631.880 kb on + strandat 5631.902 kb on + strandat 5631.976 kb on - strandat 5631.977 kb on - strandat 5631.977 kb on - strandat 5631.977 kb on - strandat 5632.032 kb on - strandat 5632.101 kb on - strandat 5632.182 kb on - strand, within BWI76_RS27135at 5632.198 kb on + strand, within BWI76_RS27135at 5632.206 kb on - strand, within BWI76_RS27135at 5632.206 kb on - strand, within BWI76_RS27135at 5632.259 kb on + strand, within BWI76_RS27135at 5632.363 kb on + strandat 5632.363 kb on + strandat 5632.610 kb on + strand, within BWI76_RS27135at 5632.634 kb on + strand, within BWI76_RS27135at 5632.686 kb on + strand, within BWI76_RS27135

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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5,628,903 + BWI76_RS27125 0.31 -2.0
5,628,956 + BWI76_RS27125 0.35 -0.2
5,628,964 - BWI76_RS27125 0.36 -1.8
5,629,047 - BWI76_RS27125 0.42 -0.8
5,629,063 + BWI76_RS27125 0.43 +0.5
5,629,063 + -0.1
5,629,068 + BWI76_RS27125 0.43 -0.7
5,629,148 + BWI76_RS27125 0.49 +0.2
5,629,148 + BWI76_RS27125 0.49 -0.1
5,629,148 + BWI76_RS27125 0.49 -0.7
5,629,148 + BWI76_RS27125 0.49 -1.3
5,629,148 + BWI76_RS27125 0.49 -0.4
5,629,156 - BWI76_RS27125 0.49 -0.6
5,629,169 + BWI76_RS27125 0.50 -1.2
5,629,409 + -0.1
5,629,522 - BWI76_RS27125 0.76 -0.7
5,629,550 + BWI76_RS27125 0.78 +0.9
5,629,607 + BWI76_RS27125 0.82 +0.4
5,629,607 + BWI76_RS27125 0.82 +0.2
5,629,615 - BWI76_RS27125 0.82 -1.8
5,629,719 - BWI76_RS27125 0.90 +0.3
5,629,733 + -0.6
5,629,857 + +0.2
5,629,857 + +0.1
5,629,857 + -0.2
5,629,857 + +1.5
5,629,857 + +0.0
5,629,857 + +1.5
5,629,859 + -0.9
5,629,865 - +1.7
5,629,865 - -2.0
5,629,865 - +0.3
5,629,865 - +0.2
5,629,865 - -0.9
5,629,867 - -0.0
5,629,970 - +0.3
5,630,006 + -0.3
5,630,046 + -0.0
5,630,054 - -0.7
5,630,197 + BWI76_RS27130 0.16 -1.3
5,630,199 + BWI76_RS27130 0.17 -0.4
5,630,253 + BWI76_RS27130 0.19 -0.3
5,630,284 - BWI76_RS27130 0.21 +0.3
5,630,377 + BWI76_RS27130 0.26 -0.3
5,630,379 + BWI76_RS27130 0.26 -0.1
5,630,563 + BWI76_RS27130 0.35 +2.5
5,630,617 + BWI76_RS27130 0.38 +1.5
5,630,759 - BWI76_RS27130 0.45 -0.3
5,630,815 + BWI76_RS27130 0.48 -1.2
5,630,836 - BWI76_RS27130 0.49 +5.0
5,630,966 + BWI76_RS27130 0.56 +2.0
5,630,968 + BWI76_RS27130 0.56 -0.1
5,630,968 + BWI76_RS27130 0.56 -0.9
5,630,968 + BWI76_RS27130 0.56 -0.4
5,630,968 + BWI76_RS27130 0.56 +2.0
5,630,976 - BWI76_RS27130 0.56 -0.3
5,630,976 - BWI76_RS27130 0.56 +1.3
5,631,084 - BWI76_RS27130 0.62 -1.0
5,631,137 + BWI76_RS27130 0.64 +0.5
5,631,170 + BWI76_RS27130 0.66 -2.4
5,631,177 + BWI76_RS27130 0.66 -0.3
5,631,177 + BWI76_RS27130 0.66 -0.1
5,631,185 - BWI76_RS27130 0.67 -0.0
5,631,291 - BWI76_RS27130 0.72 +0.2
5,631,311 + BWI76_RS27130 0.73 -0.0
5,631,312 - BWI76_RS27130 0.73 -3.1
5,631,461 - BWI76_RS27130 0.81 +0.5
5,631,515 + BWI76_RS27130 0.84 -2.2
5,631,596 - BWI76_RS27130 0.88 +0.8
5,631,805 - +0.1
5,631,838 - -1.0
5,631,844 - +0.6
5,631,863 - -0.2
5,631,880 + +0.6
5,631,902 + +0.2
5,631,976 - -1.9
5,631,977 - -0.5
5,631,977 - -1.0
5,631,977 - -0.1
5,632,032 - -0.7
5,632,101 - -0.5
5,632,182 - BWI76_RS27135 0.13 -1.3
5,632,198 + BWI76_RS27135 0.14 +1.1
5,632,206 - BWI76_RS27135 0.14 -0.9
5,632,206 - BWI76_RS27135 0.14 +0.2
5,632,259 + BWI76_RS27135 0.17 +0.2
5,632,363 + -0.1
5,632,363 + +0.7
5,632,610 + BWI76_RS27135 0.36 +1.1
5,632,634 + BWI76_RS27135 0.38 +0.5
5,632,686 + BWI76_RS27135 0.40 -1.8

Or see this region's nucleotide sequence