Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13965

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13960 and BWI76_RS13965 are separated by 24 nucleotidesBWI76_RS13965 and BWI76_RS13970 overlap by 4 nucleotidesBWI76_RS13970 and BWI76_RS13975 are separated by 4 nucleotides BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130 _RS13960 BWI76_RS13965: BWI76_RS13965 - binding-protein-dependent transport system inner membrane protein, at 2,915,155 to 2,915,970 _RS13965 BWI76_RS13970: BWI76_RS13970 - ABC transporter, at 2,915,967 to 2,916,743 _RS13970 BWI76_RS13975: BWI76_RS13975 - urea carboxylase, at 2,916,748 to 2,917,476 _RS13975 Position (kb) 2915 2916Strain fitness (log2 ratio) -2 -1 0 1at 2914.175 kb on - strandat 2914.626 kb on + strand, within BWI76_RS13960at 2914.686 kb on - strand, within BWI76_RS13960at 2914.688 kb on - strand, within BWI76_RS13960at 2914.768 kb on + strand, within BWI76_RS13960at 2915.563 kb on - strand, within BWI76_RS13965at 2915.752 kb on - strand, within BWI76_RS13965at 2916.018 kb on + strandat 2916.026 kb on - strandat 2916.576 kb on + strand, within BWI76_RS13970at 2916.777 kb on - strandat 2916.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,914,175 - -0.6
2,914,626 + BWI76_RS13960 0.52 -0.6
2,914,686 - BWI76_RS13960 0.58 +0.3
2,914,688 - BWI76_RS13960 0.58 -1.9
2,914,768 + BWI76_RS13960 0.66 +1.3
2,915,563 - BWI76_RS13965 0.50 -0.5
2,915,752 - BWI76_RS13965 0.73 -1.5
2,916,018 + -1.1
2,916,026 - +0.7
2,916,576 + BWI76_RS13970 0.78 -0.8
2,916,777 - -0.1
2,916,778 - +1.0

Or see this region's nucleotide sequence