Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12375

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12370 and BWI76_RS12375 are separated by 91 nucleotidesBWI76_RS12375 and BWI76_RS12380 are separated by 488 nucleotidesBWI76_RS12380 and BWI76_RS12385 are separated by 1 nucleotides BWI76_RS12370: BWI76_RS12370 - hypothetical protein, at 2,583,369 to 2,585,315 _RS12370 BWI76_RS12375: BWI76_RS12375 - DNA-invertase hin, at 2,585,407 to 2,585,958 _RS12375 BWI76_RS12380: BWI76_RS12380 - DNA polymerase V subunit UmuD, at 2,586,447 to 2,586,866 _RS12380 BWI76_RS12385: BWI76_RS12385 - DNA polymerase V subunit UmuC, at 2,586,868 to 2,588,133 _RS12385 Position (kb) 2585 2586Strain fitness (log2 ratio) -2 -1 0 1 2at 2584.559 kb on - strand, within BWI76_RS12370at 2584.563 kb on + strand, within BWI76_RS12370at 2584.564 kb on - strand, within BWI76_RS12370at 2584.773 kb on - strand, within BWI76_RS12370at 2584.773 kb on - strand, within BWI76_RS12370at 2584.965 kb on - strand, within BWI76_RS12370at 2585.108 kb on + strand, within BWI76_RS12370at 2585.211 kb on + strandat 2585.536 kb on + strand, within BWI76_RS12375at 2585.614 kb on - strand, within BWI76_RS12375at 2585.644 kb on - strand, within BWI76_RS12375at 2585.800 kb on + strand, within BWI76_RS12375at 2586.058 kb on - strandat 2586.071 kb on + strandat 2586.188 kb on - strandat 2586.460 kb on - strandat 2586.478 kb on + strandat 2586.505 kb on + strand, within BWI76_RS12380at 2586.547 kb on - strand, within BWI76_RS12380at 2586.570 kb on - strand, within BWI76_RS12380at 2586.582 kb on + strand, within BWI76_RS12380at 2586.687 kb on + strand, within BWI76_RS12380at 2586.758 kb on + strand, within BWI76_RS12380at 2586.764 kb on + strand, within BWI76_RS12380at 2586.825 kb on - strandat 2586.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,584,559 - BWI76_RS12370 0.61 -0.2
2,584,563 + BWI76_RS12370 0.61 +0.8
2,584,564 - BWI76_RS12370 0.61 -0.2
2,584,773 - BWI76_RS12370 0.72 +1.3
2,584,773 - BWI76_RS12370 0.72 -1.2
2,584,965 - BWI76_RS12370 0.82 +1.5
2,585,108 + BWI76_RS12370 0.89 -0.2
2,585,211 + +0.6
2,585,536 + BWI76_RS12375 0.23 -2.1
2,585,614 - BWI76_RS12375 0.38 -1.0
2,585,644 - BWI76_RS12375 0.43 -0.3
2,585,800 + BWI76_RS12375 0.71 -2.5
2,586,058 - -0.4
2,586,071 + -0.9
2,586,188 - +2.0
2,586,460 - +0.4
2,586,478 + -0.8
2,586,505 + BWI76_RS12380 0.14 +0.8
2,586,547 - BWI76_RS12380 0.24 -0.2
2,586,570 - BWI76_RS12380 0.29 +0.3
2,586,582 + BWI76_RS12380 0.32 +0.0
2,586,687 + BWI76_RS12380 0.57 -0.6
2,586,758 + BWI76_RS12380 0.74 -1.6
2,586,764 + BWI76_RS12380 0.75 +0.1
2,586,825 - +0.2
2,586,827 + +1.0

Or see this region's nucleotide sequence