Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05990

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05985 and BWI76_RS05990 overlap by 1 nucleotidesBWI76_RS05990 and BWI76_RS05995 are separated by 20 nucleotides BWI76_RS05985: BWI76_RS05985 - branched-chain amino acid ABC transporter permease, at 1,255,492 to 1,256,541 _RS05985 BWI76_RS05990: BWI76_RS05990 - branched-chain amino acid ABC transporter permease, at 1,256,541 to 1,257,440 _RS05990 BWI76_RS05995: BWI76_RS05995 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,257,461 to 1,258,597 _RS05995 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -2 -1 0 1 2at 1255.831 kb on + strand, within BWI76_RS05985at 1256.049 kb on - strand, within BWI76_RS05985at 1256.193 kb on + strand, within BWI76_RS05985at 1256.366 kb on - strand, within BWI76_RS05985at 1256.382 kb on - strand, within BWI76_RS05985at 1256.441 kb on - strandat 1256.501 kb on - strandat 1256.713 kb on - strand, within BWI76_RS05990at 1256.756 kb on + strand, within BWI76_RS05990at 1256.775 kb on + strand, within BWI76_RS05990at 1256.786 kb on + strand, within BWI76_RS05990at 1256.809 kb on + strand, within BWI76_RS05990at 1256.809 kb on + strand, within BWI76_RS05990at 1256.889 kb on + strand, within BWI76_RS05990at 1257.244 kb on - strand, within BWI76_RS05990at 1257.336 kb on + strand, within BWI76_RS05990at 1257.396 kb on - strandat 1257.524 kb on + strandat 1257.567 kb on + strandat 1257.635 kb on + strand, within BWI76_RS05995at 1257.642 kb on - strand, within BWI76_RS05995at 1257.960 kb on - strand, within BWI76_RS05995at 1258.192 kb on - strand, within BWI76_RS05995at 1258.345 kb on - strand, within BWI76_RS05995at 1258.384 kb on + strand, within BWI76_RS05995at 1258.390 kb on + strand, within BWI76_RS05995at 1258.420 kb on + strand, within BWI76_RS05995at 1258.435 kb on - strand, within BWI76_RS05995at 1258.439 kb on + strand, within BWI76_RS05995

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,255,831 + BWI76_RS05985 0.32 +0.5
1,256,049 - BWI76_RS05985 0.53 +1.4
1,256,193 + BWI76_RS05985 0.67 +0.0
1,256,366 - BWI76_RS05985 0.83 +0.3
1,256,382 - BWI76_RS05985 0.85 -1.0
1,256,441 - -0.4
1,256,501 - +2.0
1,256,713 - BWI76_RS05990 0.19 -2.0
1,256,756 + BWI76_RS05990 0.24 -0.3
1,256,775 + BWI76_RS05990 0.26 -0.7
1,256,786 + BWI76_RS05990 0.27 -0.2
1,256,809 + BWI76_RS05990 0.30 -0.1
1,256,809 + BWI76_RS05990 0.30 -0.5
1,256,889 + BWI76_RS05990 0.39 -0.0
1,257,244 - BWI76_RS05990 0.78 -1.8
1,257,336 + BWI76_RS05990 0.88 +0.6
1,257,396 - +0.0
1,257,524 + -0.0
1,257,567 + +0.6
1,257,635 + BWI76_RS05995 0.15 +0.8
1,257,642 - BWI76_RS05995 0.16 -0.4
1,257,960 - BWI76_RS05995 0.44 -1.2
1,258,192 - BWI76_RS05995 0.64 +0.3
1,258,345 - BWI76_RS05995 0.78 +2.2
1,258,384 + BWI76_RS05995 0.81 -2.2
1,258,390 + BWI76_RS05995 0.82 +0.6
1,258,420 + BWI76_RS05995 0.84 -1.2
1,258,435 - BWI76_RS05995 0.86 +0.6
1,258,439 + BWI76_RS05995 0.86 -1.6

Or see this region's nucleotide sequence