Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00285

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotidesBWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotidesBWI76_RS00285 and BWI76_RS00290 are separated by 101 nucleotides BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244 _RS00275 BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215 _RS00280 BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133 _RS00285 BWI76_RS00290: BWI76_RS00290 - Ribokinase (EC 2.7.1.15) (from data), at 60,235 to 61,164 _RS00290 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1at 58.395 kb on - strand, within BWI76_RS00280at 58.395 kb on - strand, within BWI76_RS00280at 58.442 kb on - strandat 58.490 kb on + strand, within BWI76_RS00280at 58.779 kb on + strand, within BWI76_RS00280at 58.819 kb on + strand, within BWI76_RS00280at 58.829 kb on + strand, within BWI76_RS00280at 59.158 kb on - strandat 59.173 kb on + strandat 59.215 kb on + strandat 59.231 kb on - strandat 59.272 kb on - strandat 59.417 kb on - strand, within BWI76_RS00285at 59.538 kb on - strand, within BWI76_RS00285at 59.546 kb on - strand, within BWI76_RS00285at 59.758 kb on + strand, within BWI76_RS00285at 59.758 kb on + strand, within BWI76_RS00285at 59.775 kb on + strand, within BWI76_RS00285at 59.830 kb on - strand, within BWI76_RS00285at 60.108 kb on + strandat 60.116 kb on - strandat 60.261 kb on - strandat 60.289 kb on + strandat 60.371 kb on + strand, within BWI76_RS00290at 60.462 kb on + strand, within BWI76_RS00290at 60.500 kb on - strand, within BWI76_RS00290at 60.505 kb on - strand, within BWI76_RS00290at 60.519 kb on - strand, within BWI76_RS00290at 60.597 kb on - strandat 60.599 kb on - strand, within BWI76_RS00290at 60.635 kb on + strand, within BWI76_RS00290at 60.656 kb on + strand, within BWI76_RS00290at 60.734 kb on - strand, within BWI76_RS00290at 60.734 kb on - strand, within BWI76_RS00290at 60.793 kb on + strand, within BWI76_RS00290at 60.820 kb on - strand, within BWI76_RS00290at 60.821 kb on - strand, within BWI76_RS00290at 60.865 kb on - strand, within BWI76_RS00290at 61.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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58,395 - BWI76_RS00280 0.15 -1.2
58,395 - BWI76_RS00280 0.15 -0.7
58,442 - +0.9
58,490 + BWI76_RS00280 0.25 -0.5
58,779 + BWI76_RS00280 0.55 -0.9
58,819 + BWI76_RS00280 0.59 -1.6
58,829 + BWI76_RS00280 0.60 -0.4
59,158 - -0.0
59,173 + +0.4
59,215 + +1.0
59,231 - +1.3
59,272 - -1.5
59,417 - BWI76_RS00285 0.20 -1.6
59,538 - BWI76_RS00285 0.33 -0.1
59,546 - BWI76_RS00285 0.34 +1.5
59,758 + BWI76_RS00285 0.58 +0.4
59,758 + BWI76_RS00285 0.58 +0.7
59,775 + BWI76_RS00285 0.60 +1.6
59,830 - BWI76_RS00285 0.66 +1.5
60,108 + +0.2
60,116 - -0.4
60,261 - -2.5
60,289 + -1.9
60,371 + BWI76_RS00290 0.15 -0.7
60,462 + BWI76_RS00290 0.24 -0.2
60,500 - BWI76_RS00290 0.28 -0.3
60,505 - BWI76_RS00290 0.29 -0.6
60,519 - BWI76_RS00290 0.31 +0.8
60,597 - +1.1
60,599 - BWI76_RS00290 0.39 +0.3
60,635 + BWI76_RS00290 0.43 +1.7
60,656 + BWI76_RS00290 0.45 -0.6
60,734 - BWI76_RS00290 0.54 +0.2
60,734 - BWI76_RS00290 0.54 +0.2
60,793 + BWI76_RS00290 0.60 -0.5
60,820 - BWI76_RS00290 0.63 +1.2
60,821 - BWI76_RS00290 0.63 +0.4
60,865 - BWI76_RS00290 0.68 +0.9
61,113 - -0.9

Or see this region's nucleotide sequence