Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26970 and BWI76_RS26975 are separated by 236 nucleotides BWI76_RS26975 and BWI76_RS26980 are separated by 262 nucleotides BWI76_RS26980 and BWI76_RS26985 are separated by 98 nucleotides
BWI76_RS26970: BWI76_RS26970 - aromatic acid/H+ symport family MFS transporter, at 5,594,959 to 5,596,317
_RS26970
BWI76_RS26975: BWI76_RS26975 - transcriptional regulator, at 5,596,554 to 5,596,847
_RS26975
BWI76_RS26980: BWI76_RS26980 - cold-shock protein, at 5,597,110 to 5,597,322
_RS26980
BWI76_RS26985: BWI76_RS26985 - ABC transporter ATP-binding protein, at 5,597,421 to 5,599,040
_RS26985
Position (kb) 5597
5598 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5596.261 kb on + strand at 5596.264 kb on - strand at 5596.353 kb on - strand at 5596.358 kb on + strand at 5596.376 kb on - strand at 5596.403 kb on - strand at 5596.403 kb on - strand at 5596.508 kb on + strand at 5596.508 kb on + strand at 5596.591 kb on + strand, within BWI76_RS26975 at 5596.684 kb on + strand, within BWI76_RS26975 at 5596.692 kb on - strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.729 kb on + strand, within BWI76_RS26975 at 5596.740 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.748 kb on - strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.763 kb on + strand, within BWI76_RS26975 at 5596.771 kb on - strand, within BWI76_RS26975 at 5596.772 kb on - strand, within BWI76_RS26975 at 5596.774 kb on + strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.782 kb on - strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.784 kb on + strand, within BWI76_RS26975 at 5596.788 kb on + strand, within BWI76_RS26975 at 5596.802 kb on + strand, within BWI76_RS26975 at 5596.820 kb on + strand at 5596.828 kb on - strand at 5596.953 kb on + strand at 5596.989 kb on - strand at 5597.063 kb on + strand at 5597.063 kb on + strand at 5597.071 kb on - strand at 5597.159 kb on + strand, within BWI76_RS26980 at 5597.208 kb on + strand, within BWI76_RS26980 at 5597.216 kb on - strand, within BWI76_RS26980 at 5597.218 kb on + strand, within BWI76_RS26980 at 5597.218 kb on + strand at 5597.637 kb on + strand, within BWI76_RS26985 at 5597.645 kb on - strand, within BWI76_RS26985 at 5597.649 kb on + strand, within BWI76_RS26985 at 5597.824 kb on - strand at 5598.044 kb on + strand, within BWI76_RS26985
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,596,261 + +0.7 5,596,264 - -0.6 5,596,353 - -1.5 5,596,358 + +1.4 5,596,376 - +0.8 5,596,403 - +0.5 5,596,403 - -0.8 5,596,508 + -0.8 5,596,508 + +5.6 5,596,591 + BWI76_RS26975 0.13 +0.0 5,596,684 + BWI76_RS26975 0.44 -0.6 5,596,692 - BWI76_RS26975 0.47 +1.1 5,596,729 + BWI76_RS26975 0.60 -1.0 5,596,729 + BWI76_RS26975 0.60 -0.0 5,596,729 + BWI76_RS26975 0.60 -0.2 5,596,740 - BWI76_RS26975 0.63 -0.7 5,596,748 - BWI76_RS26975 0.66 -2.2 5,596,748 - BWI76_RS26975 0.66 +0.4 5,596,763 + BWI76_RS26975 0.71 -0.2 5,596,763 + BWI76_RS26975 0.71 -0.3 5,596,771 - BWI76_RS26975 0.74 -0.3 5,596,772 - BWI76_RS26975 0.74 +1.5 5,596,774 + BWI76_RS26975 0.75 +0.1 5,596,782 - BWI76_RS26975 0.78 -1.1 5,596,782 - BWI76_RS26975 0.78 -0.3 5,596,782 - BWI76_RS26975 0.78 +0.4 5,596,784 + BWI76_RS26975 0.78 +1.1 5,596,784 + BWI76_RS26975 0.78 +0.7 5,596,788 + BWI76_RS26975 0.80 +0.3 5,596,802 + BWI76_RS26975 0.84 -0.6 5,596,820 + -1.0 5,596,828 - +0.3 5,596,953 + -0.7 5,596,989 - +0.6 5,597,063 + -0.6 5,597,063 + +0.5 5,597,071 - -0.9 5,597,159 + BWI76_RS26980 0.23 -0.3 5,597,208 + BWI76_RS26980 0.46 +2.6 5,597,216 - BWI76_RS26980 0.50 +1.9 5,597,218 + BWI76_RS26980 0.51 -0.9 5,597,218 + +1.9 5,597,637 + BWI76_RS26985 0.13 +0.5 5,597,645 - BWI76_RS26985 0.14 +1.0 5,597,649 + BWI76_RS26985 0.14 +1.7 5,597,824 - +0.9 5,598,044 + BWI76_RS26985 0.38 +0.5
Or see this region's nucleotide sequence