Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24195 and BWI76_RS24200 are separated by 163 nucleotides BWI76_RS24200 and BWI76_RS24205 are separated by 102 nucleotides
BWI76_RS24195: BWI76_RS24195 - anion transporter, at 5,043,561 to 5,044,949
_RS24195
BWI76_RS24200: BWI76_RS24200 - hypothetical protein, at 5,045,113 to 5,045,392
_RS24200
BWI76_RS24205: BWI76_RS24205 - cystathionine beta-synthase, at 5,045,495 to 5,046,865
_RS24205
Position (kb) 5045
5046 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5044.131 kb on - strand, within BWI76_RS24195 at 5044.147 kb on + strand, within BWI76_RS24195 at 5044.147 kb on + strand at 5044.170 kb on + strand, within BWI76_RS24195 at 5044.173 kb on - strand, within BWI76_RS24195 at 5044.190 kb on + strand, within BWI76_RS24195 at 5044.210 kb on - strand, within BWI76_RS24195 at 5044.213 kb on + strand, within BWI76_RS24195 at 5044.220 kb on + strand, within BWI76_RS24195 at 5044.220 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195 at 5044.228 kb on - strand, within BWI76_RS24195 at 5044.266 kb on - strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.306 kb on + strand, within BWI76_RS24195 at 5044.314 kb on - strand, within BWI76_RS24195 at 5044.316 kb on + strand, within BWI76_RS24195 at 5044.326 kb on + strand, within BWI76_RS24195 at 5044.404 kb on - strand, within BWI76_RS24195 at 5044.417 kb on - strand, within BWI76_RS24195 at 5044.421 kb on - strand, within BWI76_RS24195 at 5044.459 kb on + strand, within BWI76_RS24195 at 5044.464 kb on - strand, within BWI76_RS24195 at 5044.466 kb on - strand, within BWI76_RS24195 at 5044.518 kb on - strand, within BWI76_RS24195 at 5044.557 kb on + strand at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.584 kb on - strand, within BWI76_RS24195 at 5044.597 kb on + strand, within BWI76_RS24195 at 5044.597 kb on + strand, within BWI76_RS24195 at 5044.597 kb on + strand at 5044.634 kb on + strand, within BWI76_RS24195 at 5044.634 kb on + strand, within BWI76_RS24195 at 5044.642 kb on - strand, within BWI76_RS24195 at 5044.688 kb on - strand, within BWI76_RS24195 at 5044.696 kb on + strand, within BWI76_RS24195 at 5044.696 kb on + strand, within BWI76_RS24195 at 5044.705 kb on + strand, within BWI76_RS24195 at 5044.715 kb on + strand, within BWI76_RS24195 at 5044.720 kb on + strand, within BWI76_RS24195 at 5044.728 kb on - strand, within BWI76_RS24195 at 5044.728 kb on - strand, within BWI76_RS24195 at 5044.733 kb on + strand at 5044.773 kb on + strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.781 kb on - strand, within BWI76_RS24195 at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.795 kb on + strand at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.795 kb on + strand, within BWI76_RS24195 at 5044.799 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.800 kb on + strand, within BWI76_RS24195 at 5044.808 kb on - strand, within BWI76_RS24195 at 5044.808 kb on - strand at 5044.808 kb on - strand, within BWI76_RS24195 at 5044.817 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.823 kb on + strand at 5044.824 kb on - strand at 5044.825 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.830 kb on + strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.831 kb on - strand at 5044.832 kb on + strand at 5044.837 kb on + strand at 5044.838 kb on - strand at 5044.842 kb on + strand at 5044.845 kb on - strand at 5044.845 kb on - strand at 5044.845 kb on - strand at 5044.854 kb on + strand at 5044.862 kb on - strand at 5044.911 kb on + strand at 5044.922 kb on + strand at 5044.930 kb on - strand at 5044.958 kb on + strand at 5044.966 kb on - strand at 5044.966 kb on - strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.968 kb on + strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.976 kb on - strand at 5044.982 kb on + strand at 5044.998 kb on - strand at 5045.004 kb on + strand at 5045.177 kb on - strand, within BWI76_RS24200 at 5045.179 kb on - strand, within BWI76_RS24200 at 5045.238 kb on - strand, within BWI76_RS24200 at 5045.252 kb on + strand, within BWI76_RS24200 at 5045.274 kb on + strand, within BWI76_RS24200 at 5045.274 kb on + strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.282 kb on - strand, within BWI76_RS24200 at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.364 kb on + strand at 5045.364 kb on + strand, within BWI76_RS24200 at 5045.365 kb on + strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.372 kb on - strand at 5045.374 kb on + strand at 5045.416 kb on - strand at 5045.419 kb on - strand at 5045.493 kb on - strand at 5045.528 kb on + strand at 5045.528 kb on - strand at 5045.529 kb on + strand at 5045.557 kb on + strand at 5045.557 kb on + strand at 5045.557 kb on + strand at 5045.565 kb on - strand at 5045.616 kb on + strand at 5045.646 kb on - strand, within BWI76_RS24205 at 5045.646 kb on - strand, within BWI76_RS24205 at 5045.655 kb on - strand, within BWI76_RS24205 at 5045.657 kb on - strand, within BWI76_RS24205 at 5045.771 kb on - strand, within BWI76_RS24205 at 5045.841 kb on + strand, within BWI76_RS24205 at 5045.874 kb on + strand, within BWI76_RS24205 at 5046.084 kb on - strand, within BWI76_RS24205 at 5046.289 kb on + strand, within BWI76_RS24205 at 5046.307 kb on + strand, within BWI76_RS24205 at 5046.328 kb on + strand, within BWI76_RS24205
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,044,131 - BWI76_RS24195 0.41 -1.4 5,044,147 + BWI76_RS24195 0.42 +1.7 5,044,147 + +0.5 5,044,170 + BWI76_RS24195 0.44 -2.7 5,044,173 - BWI76_RS24195 0.44 -0.6 5,044,190 + BWI76_RS24195 0.45 -0.0 5,044,210 - BWI76_RS24195 0.47 -0.2 5,044,213 + BWI76_RS24195 0.47 -0.2 5,044,220 + BWI76_RS24195 0.47 -0.1 5,044,220 - BWI76_RS24195 0.47 +1.1 5,044,228 - BWI76_RS24195 0.48 +0.1 5,044,228 - BWI76_RS24195 0.48 +1.7 5,044,266 - BWI76_RS24195 0.51 -0.6 5,044,306 + BWI76_RS24195 0.54 -0.0 5,044,306 + BWI76_RS24195 0.54 -0.5 5,044,306 + BWI76_RS24195 0.54 +1.9 5,044,306 + BWI76_RS24195 0.54 -0.9 5,044,314 - BWI76_RS24195 0.54 +1.6 5,044,316 + BWI76_RS24195 0.54 +0.2 5,044,326 + BWI76_RS24195 0.55 -1.2 5,044,404 - BWI76_RS24195 0.61 -0.3 5,044,417 - BWI76_RS24195 0.62 +0.9 5,044,421 - BWI76_RS24195 0.62 -0.3 5,044,459 + BWI76_RS24195 0.65 +1.9 5,044,464 - BWI76_RS24195 0.65 -0.2 5,044,466 - BWI76_RS24195 0.65 -1.6 5,044,518 - BWI76_RS24195 0.69 -0.6 5,044,557 + +3.9 5,044,584 - BWI76_RS24195 0.74 -0.4 5,044,584 - BWI76_RS24195 0.74 -0.8 5,044,584 - BWI76_RS24195 0.74 -0.8 5,044,597 + BWI76_RS24195 0.75 +0.3 5,044,597 + BWI76_RS24195 0.75 +1.0 5,044,597 + +1.6 5,044,634 + BWI76_RS24195 0.77 -2.1 5,044,634 + BWI76_RS24195 0.77 +3.1 5,044,642 - BWI76_RS24195 0.78 -0.3 5,044,688 - BWI76_RS24195 0.81 +1.6 5,044,696 + BWI76_RS24195 0.82 +0.5 5,044,696 + BWI76_RS24195 0.82 +1.7 5,044,705 + BWI76_RS24195 0.82 +0.3 5,044,715 + BWI76_RS24195 0.83 +0.3 5,044,720 + BWI76_RS24195 0.83 -1.4 5,044,728 - BWI76_RS24195 0.84 +1.3 5,044,728 - BWI76_RS24195 0.84 +1.2 5,044,733 + -0.5 5,044,773 + BWI76_RS24195 0.87 -1.1 5,044,781 - BWI76_RS24195 0.88 +0.1 5,044,781 - BWI76_RS24195 0.88 -2.3 5,044,781 - BWI76_RS24195 0.88 -0.1 5,044,795 + BWI76_RS24195 0.89 -1.1 5,044,795 + +0.5 5,044,795 + BWI76_RS24195 0.89 -0.4 5,044,795 + BWI76_RS24195 0.89 -1.9 5,044,799 + BWI76_RS24195 0.89 +0.3 5,044,800 + BWI76_RS24195 0.89 -2.9 5,044,800 + BWI76_RS24195 0.89 -0.6 5,044,800 + BWI76_RS24195 0.89 +0.6 5,044,808 - BWI76_RS24195 0.90 +1.7 5,044,808 - +0.3 5,044,808 - BWI76_RS24195 0.90 +1.3 5,044,817 + +0.1 5,044,823 + +0.4 5,044,823 + -0.1 5,044,823 + -0.2 5,044,823 + +1.3 5,044,823 + -1.0 5,044,823 + +1.1 5,044,823 + -2.1 5,044,823 + -0.6 5,044,824 - -0.5 5,044,825 + +0.5 5,044,830 + +1.4 5,044,830 + +0.3 5,044,830 + -1.5 5,044,830 + +0.9 5,044,831 - -1.6 5,044,831 - -0.8 5,044,831 - +2.9 5,044,831 - +0.3 5,044,831 - -1.5 5,044,831 - +1.0 5,044,831 - +0.0 5,044,831 - +1.4 5,044,832 + +1.0 5,044,837 + +0.7 5,044,838 - -1.7 5,044,842 + +0.4 5,044,845 - -2.4 5,044,845 - -2.9 5,044,845 - +0.3 5,044,854 + -0.0 5,044,862 - -2.5 5,044,911 + +1.4 5,044,922 + +0.9 5,044,930 - +0.3 5,044,958 + +2.1 5,044,966 - +0.3 5,044,966 - -0.9 5,044,968 + -0.4 5,044,968 + +1.3 5,044,968 + +1.8 5,044,968 + +1.2 5,044,968 + -2.5 5,044,968 + -1.3 5,044,968 + -1.3 5,044,968 + -0.8 5,044,968 + -1.3 5,044,968 + +0.5 5,044,968 + +2.1 5,044,976 - -0.1 5,044,976 - +0.1 5,044,976 - +2.9 5,044,976 - +0.8 5,044,976 - -1.8 5,044,976 - -2.4 5,044,976 - -0.3 5,044,976 - +2.0 5,044,976 - +2.1 5,044,982 + +1.3 5,044,998 - -1.4 5,045,004 + -0.7 5,045,177 - BWI76_RS24200 0.23 -0.7 5,045,179 - BWI76_RS24200 0.24 -1.4 5,045,238 - BWI76_RS24200 0.45 -0.3 5,045,252 + BWI76_RS24200 0.50 -0.1 5,045,274 + BWI76_RS24200 0.57 +3.2 5,045,274 + BWI76_RS24200 0.57 +0.3 5,045,282 - BWI76_RS24200 0.60 +0.0 5,045,282 - BWI76_RS24200 0.60 -0.4 5,045,282 - BWI76_RS24200 0.60 -0.4 5,045,364 + BWI76_RS24200 0.90 +1.5 5,045,364 + BWI76_RS24200 0.90 +0.6 5,045,364 + +1.3 5,045,364 + BWI76_RS24200 0.90 +1.5 5,045,365 + +0.5 5,045,372 - +0.1 5,045,372 - +0.5 5,045,372 - -2.4 5,045,372 - +5.9 5,045,372 - +0.9 5,045,372 - -0.3 5,045,374 + +0.9 5,045,416 - +1.5 5,045,419 - -0.5 5,045,493 - +2.9 5,045,528 + +1.1 5,045,528 - -1.0 5,045,529 + -2.6 5,045,557 + -0.3 5,045,557 + +0.8 5,045,557 + -0.1 5,045,565 - +0.7 5,045,616 + +1.3 5,045,646 - BWI76_RS24205 0.11 -0.1 5,045,646 - BWI76_RS24205 0.11 -1.4 5,045,655 - BWI76_RS24205 0.12 +2.4 5,045,657 - BWI76_RS24205 0.12 -1.0 5,045,771 - BWI76_RS24205 0.20 -0.1 5,045,841 + BWI76_RS24205 0.25 -0.1 5,045,874 + BWI76_RS24205 0.28 +0.7 5,046,084 - BWI76_RS24205 0.43 -0.6 5,046,289 + BWI76_RS24205 0.58 +5.6 5,046,307 + BWI76_RS24205 0.59 -2.5 5,046,328 + BWI76_RS24205 0.61 +1.2
Or see this region's nucleotide sequence