Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22010 and BWI76_RS22015 are separated by 474 nucleotides BWI76_RS22015 and BWI76_RS22020 are separated by 4 nucleotides BWI76_RS22020 and BWI76_RS22025 are separated by 36 nucleotides BWI76_RS22025 and BWI76_RS22030 are separated by 149 nucleotides BWI76_RS22030 and BWI76_RS22035 are separated by 63 nucleotides
BWI76_RS22010: BWI76_RS22010 - DNA binding protein, nucleoid-associated, at 4,597,791 to 4,598,192
_RS22010
BWI76_RS22015: BWI76_RS22015 - hypothetical protein, at 4,598,667 to 4,598,894
_RS22015
BWI76_RS22020: BWI76_RS22020 - L-alanine exporter AlaE, at 4,598,899 to 4,599,354
_RS22020
BWI76_RS22025: BWI76_RS22025 - hypothetical protein, at 4,599,391 to 4,599,741
_RS22025
BWI76_RS22030: BWI76_RS22030 - membrane protein, at 4,599,891 to 4,600,217
_RS22030
BWI76_RS22035: BWI76_RS22035 - DeoR family transcriptional regulator, at 4,600,281 to 4,601,639
_RS22035
Position (kb) 4598
4599
4600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4597.920 kb on + strand, within BWI76_RS22010 at 4597.951 kb on + strand, within BWI76_RS22010 at 4597.951 kb on + strand, within BWI76_RS22010 at 4597.951 kb on + strand, within BWI76_RS22010 at 4597.959 kb on - strand, within BWI76_RS22010 at 4597.959 kb on - strand, within BWI76_RS22010 at 4597.959 kb on - strand, within BWI76_RS22010 at 4597.964 kb on - strand, within BWI76_RS22010 at 4597.978 kb on + strand, within BWI76_RS22010 at 4597.978 kb on + strand, within BWI76_RS22010 at 4597.978 kb on + strand, within BWI76_RS22010 at 4597.979 kb on + strand, within BWI76_RS22010 at 4597.981 kb on - strand, within BWI76_RS22010 at 4597.981 kb on - strand, within BWI76_RS22010 at 4597.987 kb on - strand, within BWI76_RS22010 at 4598.025 kb on + strand, within BWI76_RS22010 at 4598.041 kb on - strand, within BWI76_RS22010 at 4598.045 kb on + strand, within BWI76_RS22010 at 4598.045 kb on + strand, within BWI76_RS22010 at 4598.045 kb on + strand, within BWI76_RS22010 at 4598.045 kb on + strand, within BWI76_RS22010 at 4598.054 kb on - strand, within BWI76_RS22010 at 4598.054 kb on - strand, within BWI76_RS22010 at 4598.054 kb on - strand, within BWI76_RS22010 at 4598.054 kb on - strand, within BWI76_RS22010 at 4598.064 kb on - strand, within BWI76_RS22010 at 4598.071 kb on - strand, within BWI76_RS22010 at 4598.089 kb on + strand, within BWI76_RS22010 at 4598.089 kb on + strand, within BWI76_RS22010 at 4598.091 kb on - strand, within BWI76_RS22010 at 4598.095 kb on + strand, within BWI76_RS22010 at 4598.095 kb on + strand, within BWI76_RS22010 at 4598.096 kb on + strand, within BWI76_RS22010 at 4598.097 kb on - strand, within BWI76_RS22010 at 4598.097 kb on - strand, within BWI76_RS22010 at 4598.097 kb on - strand, within BWI76_RS22010 at 4598.097 kb on - strand, within BWI76_RS22010 at 4598.103 kb on - strand, within BWI76_RS22010 at 4598.105 kb on + strand, within BWI76_RS22010 at 4598.105 kb on + strand, within BWI76_RS22010 at 4598.128 kb on - strand, within BWI76_RS22010 at 4598.128 kb on - strand, within BWI76_RS22010 at 4598.128 kb on - strand, within BWI76_RS22010 at 4598.128 kb on - strand, within BWI76_RS22010 at 4598.128 kb on - strand at 4598.250 kb on - strand at 4598.365 kb on - strand at 4598.365 kb on - strand at 4598.391 kb on + strand at 4598.391 kb on + strand at 4598.419 kb on + strand at 4598.428 kb on - strand at 4598.428 kb on - strand at 4598.428 kb on - strand at 4598.434 kb on + strand at 4598.439 kb on + strand at 4598.444 kb on + strand at 4598.444 kb on + strand at 4598.444 kb on + strand at 4598.452 kb on - strand at 4598.454 kb on + strand at 4598.459 kb on + strand at 4598.462 kb on - strand at 4598.472 kb on - strand at 4598.472 kb on - strand at 4598.593 kb on + strand at 4598.596 kb on - strand at 4598.596 kb on - strand at 4598.730 kb on + strand, within BWI76_RS22015 at 4598.742 kb on + strand, within BWI76_RS22015 at 4598.750 kb on - strand, within BWI76_RS22015 at 4598.820 kb on + strand, within BWI76_RS22015 at 4598.820 kb on + strand, within BWI76_RS22015 at 4598.828 kb on - strand, within BWI76_RS22015 at 4598.828 kb on - strand, within BWI76_RS22015 at 4598.828 kb on - strand, within BWI76_RS22015 at 4598.889 kb on - strand at 4598.903 kb on + strand at 4598.903 kb on + strand at 4598.903 kb on + strand at 4598.903 kb on + strand at 4598.908 kb on + strand at 4598.908 kb on + strand at 4598.911 kb on - strand at 4598.916 kb on - strand at 4598.935 kb on + strand at 4598.942 kb on + strand at 4598.950 kb on - strand, within BWI76_RS22020 at 4598.950 kb on - strand, within BWI76_RS22020 at 4598.976 kb on - strand, within BWI76_RS22020 at 4599.130 kb on - strand, within BWI76_RS22020 at 4599.218 kb on + strand, within BWI76_RS22020 at 4599.302 kb on + strand at 4599.337 kb on + strand at 4599.346 kb on - strand at 4599.351 kb on - strand at 4599.383 kb on - strand at 4599.402 kb on - strand at 4599.458 kb on - strand, within BWI76_RS22025 at 4599.470 kb on + strand, within BWI76_RS22025 at 4599.470 kb on + strand, within BWI76_RS22025 at 4599.470 kb on + strand, within BWI76_RS22025 at 4599.470 kb on + strand, within BWI76_RS22025 at 4599.478 kb on - strand, within BWI76_RS22025 at 4599.478 kb on - strand, within BWI76_RS22025 at 4599.552 kb on + strand, within BWI76_RS22025 at 4599.558 kb on + strand, within BWI76_RS22025 at 4599.558 kb on + strand, within BWI76_RS22025 at 4599.560 kb on - strand, within BWI76_RS22025 at 4599.563 kb on + strand, within BWI76_RS22025 at 4599.563 kb on + strand, within BWI76_RS22025 at 4599.566 kb on - strand, within BWI76_RS22025 at 4599.571 kb on - strand, within BWI76_RS22025 at 4599.571 kb on - strand, within BWI76_RS22025 at 4599.581 kb on - strand, within BWI76_RS22025 at 4599.607 kb on + strand, within BWI76_RS22025 at 4599.607 kb on + strand, within BWI76_RS22025 at 4599.607 kb on + strand, within BWI76_RS22025 at 4599.607 kb on + strand, within BWI76_RS22025 at 4599.614 kb on - strand, within BWI76_RS22025 at 4599.615 kb on - strand, within BWI76_RS22025 at 4599.615 kb on - strand, within BWI76_RS22025 at 4599.615 kb on - strand, within BWI76_RS22025 at 4599.618 kb on - strand, within BWI76_RS22025 at 4599.651 kb on + strand, within BWI76_RS22025 at 4599.652 kb on + strand, within BWI76_RS22025 at 4599.658 kb on + strand, within BWI76_RS22025 at 4599.659 kb on - strand, within BWI76_RS22025 at 4599.659 kb on - strand, within BWI76_RS22025 at 4599.660 kb on - strand, within BWI76_RS22025 at 4599.660 kb on - strand, within BWI76_RS22025 at 4599.661 kb on - strand, within BWI76_RS22025 at 4599.666 kb on - strand, within BWI76_RS22025 at 4599.681 kb on + strand, within BWI76_RS22025 at 4599.767 kb on + strand at 4599.768 kb on + strand at 4599.768 kb on + strand at 4599.769 kb on + strand at 4599.775 kb on - strand at 4599.776 kb on - strand at 4599.776 kb on - strand at 4599.776 kb on - strand at 4599.776 kb on - strand at 4599.779 kb on + strand at 4599.781 kb on - strand at 4599.781 kb on - strand at 4599.782 kb on - strand at 4599.782 kb on - strand at 4599.823 kb on + strand at 4599.831 kb on - strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on + strand at 4599.858 kb on - strand at 4599.858 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.874 kb on + strand at 4599.906 kb on + strand at 4599.906 kb on + strand at 4599.914 kb on - strand at 4599.914 kb on - strand at 4599.914 kb on - strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.916 kb on + strand at 4599.918 kb on + strand at 4599.918 kb on + strand at 4599.918 kb on + strand at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.924 kb on - strand, within BWI76_RS22030 at 4599.926 kb on - strand, within BWI76_RS22030 at 4599.928 kb on + strand, within BWI76_RS22030 at 4599.970 kb on + strand, within BWI76_RS22030 at 4599.978 kb on - strand, within BWI76_RS22030 at 4600.024 kb on - strand, within BWI76_RS22030 at 4600.064 kb on + strand, within BWI76_RS22030 at 4600.078 kb on - strand, within BWI76_RS22030 at 4600.110 kb on + strand, within BWI76_RS22030 at 4600.120 kb on + strand, within BWI76_RS22030 at 4600.123 kb on - strand, within BWI76_RS22030 at 4600.266 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,597,920 + BWI76_RS22010 0.32 -0.8 4,597,951 + BWI76_RS22010 0.40 -0.3 4,597,951 + BWI76_RS22010 0.40 +1.9 4,597,951 + BWI76_RS22010 0.40 +0.6 4,597,959 - BWI76_RS22010 0.42 -0.3 4,597,959 - BWI76_RS22010 0.42 +2.2 4,597,959 - BWI76_RS22010 0.42 -0.0 4,597,964 - BWI76_RS22010 0.43 +1.1 4,597,978 + BWI76_RS22010 0.47 +1.2 4,597,978 + BWI76_RS22010 0.47 -2.5 4,597,978 + BWI76_RS22010 0.47 -1.3 4,597,979 + BWI76_RS22010 0.47 -0.2 4,597,981 - BWI76_RS22010 0.47 +0.0 4,597,981 - BWI76_RS22010 0.47 +0.1 4,597,987 - BWI76_RS22010 0.49 +1.0 4,598,025 + BWI76_RS22010 0.58 -3.2 4,598,041 - BWI76_RS22010 0.62 +0.7 4,598,045 + BWI76_RS22010 0.63 +1.0 4,598,045 + BWI76_RS22010 0.63 -1.1 4,598,045 + BWI76_RS22010 0.63 -0.3 4,598,045 + BWI76_RS22010 0.63 -0.2 4,598,054 - BWI76_RS22010 0.65 +1.3 4,598,054 - BWI76_RS22010 0.65 +0.0 4,598,054 - BWI76_RS22010 0.65 +0.5 4,598,054 - BWI76_RS22010 0.65 -3.0 4,598,064 - BWI76_RS22010 0.68 +1.5 4,598,071 - BWI76_RS22010 0.70 +0.8 4,598,089 + BWI76_RS22010 0.74 +2.3 4,598,089 + BWI76_RS22010 0.74 +1.1 4,598,091 - BWI76_RS22010 0.75 +0.2 4,598,095 + BWI76_RS22010 0.76 +0.8 4,598,095 + BWI76_RS22010 0.76 +0.6 4,598,096 + BWI76_RS22010 0.76 +1.3 4,598,097 - BWI76_RS22010 0.76 +0.1 4,598,097 - BWI76_RS22010 0.76 +1.4 4,598,097 - BWI76_RS22010 0.76 +0.8 4,598,097 - BWI76_RS22010 0.76 -0.1 4,598,103 - BWI76_RS22010 0.78 +0.2 4,598,105 + BWI76_RS22010 0.78 +0.5 4,598,105 + BWI76_RS22010 0.78 +0.5 4,598,128 - BWI76_RS22010 0.84 -2.8 4,598,128 - BWI76_RS22010 0.84 -2.2 4,598,128 - BWI76_RS22010 0.84 -0.2 4,598,128 - BWI76_RS22010 0.84 -0.1 4,598,128 - -0.7 4,598,250 - +0.8 4,598,365 - +1.3 4,598,365 - -1.7 4,598,391 + +1.8 4,598,391 + +1.3 4,598,419 + -2.0 4,598,428 - -0.1 4,598,428 - -1.1 4,598,428 - -0.9 4,598,434 + -0.4 4,598,439 + +1.5 4,598,444 + +1.0 4,598,444 + +1.3 4,598,444 + +2.4 4,598,452 - -0.4 4,598,454 + +0.9 4,598,459 + -1.2 4,598,462 - +1.8 4,598,472 - -1.2 4,598,472 - +0.4 4,598,593 + +0.3 4,598,596 - -0.2 4,598,596 - -0.2 4,598,730 + BWI76_RS22015 0.28 -0.2 4,598,742 + BWI76_RS22015 0.33 +0.3 4,598,750 - BWI76_RS22015 0.36 -0.4 4,598,820 + BWI76_RS22015 0.67 -1.9 4,598,820 + BWI76_RS22015 0.67 -0.9 4,598,828 - BWI76_RS22015 0.71 -0.7 4,598,828 - BWI76_RS22015 0.71 +0.2 4,598,828 - BWI76_RS22015 0.71 +0.7 4,598,889 - +0.8 4,598,903 + +0.8 4,598,903 + -2.2 4,598,903 + +0.3 4,598,903 + +1.8 4,598,908 + -0.1 4,598,908 + -1.4 4,598,911 - -0.5 4,598,916 - -0.4 4,598,935 + -0.4 4,598,942 + +1.3 4,598,950 - BWI76_RS22020 0.11 +0.2 4,598,950 - BWI76_RS22020 0.11 +0.5 4,598,976 - BWI76_RS22020 0.17 +4.2 4,599,130 - BWI76_RS22020 0.51 -0.2 4,599,218 + BWI76_RS22020 0.70 -0.1 4,599,302 + -0.2 4,599,337 + +0.7 4,599,346 - +0.6 4,599,351 - -3.3 4,599,383 - -1.9 4,599,402 - -0.3 4,599,458 - BWI76_RS22025 0.19 +0.3 4,599,470 + BWI76_RS22025 0.23 -0.3 4,599,470 + BWI76_RS22025 0.23 -0.3 4,599,470 + BWI76_RS22025 0.23 +0.5 4,599,470 + BWI76_RS22025 0.23 -1.7 4,599,478 - BWI76_RS22025 0.25 -0.4 4,599,478 - BWI76_RS22025 0.25 -1.2 4,599,552 + BWI76_RS22025 0.46 +0.1 4,599,558 + BWI76_RS22025 0.48 -0.6 4,599,558 + BWI76_RS22025 0.48 -0.6 4,599,560 - BWI76_RS22025 0.48 +0.8 4,599,563 + BWI76_RS22025 0.49 -1.6 4,599,563 + BWI76_RS22025 0.49 -1.8 4,599,566 - BWI76_RS22025 0.50 +1.9 4,599,571 - BWI76_RS22025 0.51 +0.1 4,599,571 - BWI76_RS22025 0.51 +0.9 4,599,581 - BWI76_RS22025 0.54 +0.0 4,599,607 + BWI76_RS22025 0.62 -2.0 4,599,607 + BWI76_RS22025 0.62 +1.1 4,599,607 + BWI76_RS22025 0.62 +0.6 4,599,607 + BWI76_RS22025 0.62 +0.2 4,599,614 - BWI76_RS22025 0.64 +0.2 4,599,615 - BWI76_RS22025 0.64 -0.3 4,599,615 - BWI76_RS22025 0.64 -0.5 4,599,615 - BWI76_RS22025 0.64 -1.0 4,599,618 - BWI76_RS22025 0.65 +1.8 4,599,651 + BWI76_RS22025 0.74 -0.4 4,599,652 + BWI76_RS22025 0.74 -0.5 4,599,658 + BWI76_RS22025 0.76 +0.4 4,599,659 - BWI76_RS22025 0.76 -0.2 4,599,659 - BWI76_RS22025 0.76 +1.1 4,599,660 - BWI76_RS22025 0.77 -4.2 4,599,660 - BWI76_RS22025 0.77 -0.9 4,599,661 - BWI76_RS22025 0.77 -3.3 4,599,666 - BWI76_RS22025 0.78 +3.3 4,599,681 + BWI76_RS22025 0.83 +2.1 4,599,767 + -0.6 4,599,768 + +0.5 4,599,768 + +0.2 4,599,769 + -0.3 4,599,775 - -0.0 4,599,776 - -1.2 4,599,776 - -0.0 4,599,776 - -0.7 4,599,776 - +0.5 4,599,779 + +0.8 4,599,781 - -2.0 4,599,781 - -1.3 4,599,782 - -0.2 4,599,782 - -0.7 4,599,823 + +1.2 4,599,831 - -0.7 4,599,858 + +4.6 4,599,858 + -1.8 4,599,858 + -0.2 4,599,858 + +0.9 4,599,858 + +0.4 4,599,858 + -1.2 4,599,858 + +0.1 4,599,858 + -1.6 4,599,858 + +0.4 4,599,858 - +0.5 4,599,858 - -0.8 4,599,866 - +0.6 4,599,866 - -0.8 4,599,866 - -1.6 4,599,866 - -1.0 4,599,866 - -0.0 4,599,866 - +0.5 4,599,866 - +0.0 4,599,874 + +0.2 4,599,906 + -0.4 4,599,906 + +2.2 4,599,914 - -0.2 4,599,914 - -2.3 4,599,914 - -0.0 4,599,916 + +0.4 4,599,916 + +1.3 4,599,916 + +0.3 4,599,916 + +0.1 4,599,916 + -0.3 4,599,916 + +0.0 4,599,916 + +1.0 4,599,916 + -0.7 4,599,916 + +0.1 4,599,916 + +0.7 4,599,916 + +0.4 4,599,918 + +2.3 4,599,918 + -0.6 4,599,918 + -1.5 4,599,924 - BWI76_RS22030 0.10 +0.9 4,599,924 - BWI76_RS22030 0.10 +0.8 4,599,924 - BWI76_RS22030 0.10 +2.4 4,599,924 - BWI76_RS22030 0.10 -0.8 4,599,924 - BWI76_RS22030 0.10 -0.1 4,599,924 - BWI76_RS22030 0.10 -0.3 4,599,924 - BWI76_RS22030 0.10 +0.7 4,599,924 - BWI76_RS22030 0.10 +0.3 4,599,924 - BWI76_RS22030 0.10 +0.1 4,599,924 - BWI76_RS22030 0.10 -0.1 4,599,924 - BWI76_RS22030 0.10 -1.5 4,599,924 - BWI76_RS22030 0.10 +1.3 4,599,924 - BWI76_RS22030 0.10 -0.6 4,599,924 - BWI76_RS22030 0.10 +0.1 4,599,924 - BWI76_RS22030 0.10 -0.5 4,599,924 - BWI76_RS22030 0.10 +0.3 4,599,924 - BWI76_RS22030 0.10 -0.4 4,599,924 - BWI76_RS22030 0.10 -0.7 4,599,924 - BWI76_RS22030 0.10 +0.0 4,599,924 - BWI76_RS22030 0.10 -0.8 4,599,926 - BWI76_RS22030 0.11 -2.9 4,599,928 + BWI76_RS22030 0.11 +1.3 4,599,970 + BWI76_RS22030 0.24 +2.2 4,599,978 - BWI76_RS22030 0.27 +0.5 4,600,024 - BWI76_RS22030 0.41 -0.2 4,600,064 + BWI76_RS22030 0.53 +0.1 4,600,078 - BWI76_RS22030 0.57 +2.4 4,600,110 + BWI76_RS22030 0.67 -0.1 4,600,120 + BWI76_RS22030 0.70 -0.1 4,600,123 - BWI76_RS22030 0.71 +0.6 4,600,266 + +0.5
Or see this region's nucleotide sequence