Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21945 and BWI76_RS21950 are separated by 39 nucleotides BWI76_RS21950 and BWI76_RS21955 are separated by 35 nucleotides BWI76_RS21955 and BWI76_RS21960 are separated by 135 nucleotides
BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408
_RS21945
BWI76_RS21950: BWI76_RS21950 - prephenate dehydratase/arogenate dehydratase, at 4,585,448 to 4,586,221
_RS21950
BWI76_RS21955: BWI76_RS21955 - transferase, at 4,586,257 to 4,587,051
_RS21955
BWI76_RS21960: BWI76_RS21960 - fimbrial protein, at 4,587,187 to 4,588,281
_RS21960
Position (kb)
4586
4587
4588 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4585.327 kb on + strand at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.575 kb on - strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.613 kb on + strand, within BWI76_RS21950 at 4585.655 kb on - strand, within BWI76_RS21950 at 4585.695 kb on + strand, within BWI76_RS21950 at 4585.703 kb on + strand, within BWI76_RS21950 at 4585.781 kb on - strand, within BWI76_RS21950 at 4585.927 kb on + strand, within BWI76_RS21950 at 4585.982 kb on - strand, within BWI76_RS21950 at 4586.011 kb on + strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.019 kb on - strand, within BWI76_RS21950 at 4586.056 kb on - strand, within BWI76_RS21950 at 4586.309 kb on - strand at 4586.419 kb on + strand, within BWI76_RS21955 at 4586.536 kb on + strand, within BWI76_RS21955 at 4586.537 kb on + strand, within BWI76_RS21955 at 4586.676 kb on + strand, within BWI76_RS21955 at 4586.727 kb on - strand, within BWI76_RS21955 at 4586.897 kb on + strand, within BWI76_RS21955 at 4586.911 kb on + strand, within BWI76_RS21955 at 4586.980 kb on - strand at 4587.031 kb on - strand at 4587.326 kb on + strand, within BWI76_RS21960 at 4587.435 kb on - strand, within BWI76_RS21960 at 4587.461 kb on + strand, within BWI76_RS21960 at 4587.620 kb on + strand, within BWI76_RS21960 at 4587.681 kb on - strand, within BWI76_RS21960 at 4587.712 kb on + strand, within BWI76_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,585,327 + +2.4 4,585,575 - BWI76_RS21950 0.16 -1.0 4,585,575 - BWI76_RS21950 0.16 -0.2 4,585,613 + BWI76_RS21950 0.21 -0.3 4,585,613 + BWI76_RS21950 0.21 -1.3 4,585,655 - BWI76_RS21950 0.27 -0.5 4,585,695 + BWI76_RS21950 0.32 -0.1 4,585,703 + BWI76_RS21950 0.33 -1.2 4,585,781 - BWI76_RS21950 0.43 +0.2 4,585,927 + BWI76_RS21950 0.62 +0.1 4,585,982 - BWI76_RS21950 0.69 +0.3 4,586,011 + BWI76_RS21950 0.73 -0.8 4,586,019 - BWI76_RS21950 0.74 -0.5 4,586,019 - BWI76_RS21950 0.74 -1.5 4,586,019 - BWI76_RS21950 0.74 -0.2 4,586,056 - BWI76_RS21950 0.79 -0.6 4,586,309 - -0.1 4,586,419 + BWI76_RS21955 0.20 +0.3 4,586,536 + BWI76_RS21955 0.35 +4.1 4,586,537 + BWI76_RS21955 0.35 +2.0 4,586,676 + BWI76_RS21955 0.53 -0.8 4,586,727 - BWI76_RS21955 0.59 +0.3 4,586,897 + BWI76_RS21955 0.81 -1.2 4,586,911 + BWI76_RS21955 0.82 -0.8 4,586,980 - +0.2 4,587,031 - -0.2 4,587,326 + BWI76_RS21960 0.13 -0.4 4,587,435 - BWI76_RS21960 0.23 -1.1 4,587,461 + BWI76_RS21960 0.25 -1.8 4,587,620 + BWI76_RS21960 0.40 +0.3 4,587,681 - BWI76_RS21960 0.45 +0.5 4,587,712 + BWI76_RS21960 0.48 -0.9
Or see this region's nucleotide sequence