Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21955

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21945 and BWI76_RS21950 are separated by 39 nucleotidesBWI76_RS21950 and BWI76_RS21955 are separated by 35 nucleotidesBWI76_RS21955 and BWI76_RS21960 are separated by 135 nucleotides BWI76_RS21945: BWI76_RS21945 - LysR family transcriptional regulator, at 4,584,488 to 4,585,408 _RS21945 BWI76_RS21950: BWI76_RS21950 - prephenate dehydratase/arogenate dehydratase, at 4,585,448 to 4,586,221 _RS21950 BWI76_RS21955: BWI76_RS21955 - transferase, at 4,586,257 to 4,587,051 _RS21955 BWI76_RS21960: BWI76_RS21960 - fimbrial protein, at 4,587,187 to 4,588,281 _RS21960 Position (kb) 4586 4587 4588Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4585.327 kb on + strandat 4585.575 kb on - strand, within BWI76_RS21950at 4585.575 kb on - strand, within BWI76_RS21950at 4585.613 kb on + strand, within BWI76_RS21950at 4585.613 kb on + strand, within BWI76_RS21950at 4585.655 kb on - strand, within BWI76_RS21950at 4585.695 kb on + strand, within BWI76_RS21950at 4585.703 kb on + strand, within BWI76_RS21950at 4585.781 kb on - strand, within BWI76_RS21950at 4585.927 kb on + strand, within BWI76_RS21950at 4585.982 kb on - strand, within BWI76_RS21950at 4586.011 kb on + strand, within BWI76_RS21950at 4586.019 kb on - strand, within BWI76_RS21950at 4586.019 kb on - strand, within BWI76_RS21950at 4586.019 kb on - strand, within BWI76_RS21950at 4586.056 kb on - strand, within BWI76_RS21950at 4586.309 kb on - strandat 4586.419 kb on + strand, within BWI76_RS21955at 4586.536 kb on + strand, within BWI76_RS21955at 4586.537 kb on + strand, within BWI76_RS21955at 4586.676 kb on + strand, within BWI76_RS21955at 4586.727 kb on - strand, within BWI76_RS21955at 4586.897 kb on + strand, within BWI76_RS21955at 4586.911 kb on + strand, within BWI76_RS21955at 4586.980 kb on - strandat 4587.031 kb on - strandat 4587.326 kb on + strand, within BWI76_RS21960at 4587.435 kb on - strand, within BWI76_RS21960at 4587.461 kb on + strand, within BWI76_RS21960at 4587.620 kb on + strand, within BWI76_RS21960at 4587.681 kb on - strand, within BWI76_RS21960at 4587.712 kb on + strand, within BWI76_RS21960

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,585,327 + +2.4
4,585,575 - BWI76_RS21950 0.16 -1.0
4,585,575 - BWI76_RS21950 0.16 -0.2
4,585,613 + BWI76_RS21950 0.21 -0.3
4,585,613 + BWI76_RS21950 0.21 -1.3
4,585,655 - BWI76_RS21950 0.27 -0.5
4,585,695 + BWI76_RS21950 0.32 -0.1
4,585,703 + BWI76_RS21950 0.33 -1.2
4,585,781 - BWI76_RS21950 0.43 +0.2
4,585,927 + BWI76_RS21950 0.62 +0.1
4,585,982 - BWI76_RS21950 0.69 +0.3
4,586,011 + BWI76_RS21950 0.73 -0.8
4,586,019 - BWI76_RS21950 0.74 -0.5
4,586,019 - BWI76_RS21950 0.74 -1.5
4,586,019 - BWI76_RS21950 0.74 -0.2
4,586,056 - BWI76_RS21950 0.79 -0.6
4,586,309 - -0.1
4,586,419 + BWI76_RS21955 0.20 +0.3
4,586,536 + BWI76_RS21955 0.35 +4.1
4,586,537 + BWI76_RS21955 0.35 +2.0
4,586,676 + BWI76_RS21955 0.53 -0.8
4,586,727 - BWI76_RS21955 0.59 +0.3
4,586,897 + BWI76_RS21955 0.81 -1.2
4,586,911 + BWI76_RS21955 0.82 -0.8
4,586,980 - +0.2
4,587,031 - -0.2
4,587,326 + BWI76_RS21960 0.13 -0.4
4,587,435 - BWI76_RS21960 0.23 -1.1
4,587,461 + BWI76_RS21960 0.25 -1.8
4,587,620 + BWI76_RS21960 0.40 +0.3
4,587,681 - BWI76_RS21960 0.45 +0.5
4,587,712 + BWI76_RS21960 0.48 -0.9

Or see this region's nucleotide sequence