Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19505

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19500 and BWI76_RS19505 are separated by 7 nucleotidesBWI76_RS19505 and BWI76_RS19510 are separated by 167 nucleotides BWI76_RS19500: BWI76_RS19500 - osmoprotectant uptake system permease, at 4,074,023 to 4,075,180 _RS19500 BWI76_RS19505: BWI76_RS19505 - ABC transporter substrate-binding protein, at 4,075,188 to 4,076,105 _RS19505 BWI76_RS19510: BWI76_RS19510 - beta-glucosidase, at 4,076,273 to 4,078,570 _RS19510 Position (kb) 4075 4076 4077Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4074.190 kb on - strand, within BWI76_RS19500at 4074.236 kb on + strand, within BWI76_RS19500at 4074.257 kb on + strand, within BWI76_RS19500at 4074.351 kb on - strand, within BWI76_RS19500at 4074.369 kb on - strand, within BWI76_RS19500at 4074.406 kb on + strandat 4074.869 kb on + strand, within BWI76_RS19500at 4074.892 kb on - strand, within BWI76_RS19500at 4074.897 kb on - strand, within BWI76_RS19500at 4075.369 kb on - strand, within BWI76_RS19505at 4075.594 kb on - strand, within BWI76_RS19505at 4075.622 kb on + strand, within BWI76_RS19505at 4075.714 kb on + strand, within BWI76_RS19505at 4075.907 kb on + strand, within BWI76_RS19505at 4075.915 kb on - strand, within BWI76_RS19505at 4075.957 kb on - strand, within BWI76_RS19505at 4076.428 kb on + strandat 4076.614 kb on + strand, within BWI76_RS19510at 4076.669 kb on - strand, within BWI76_RS19510at 4076.679 kb on - strand, within BWI76_RS19510at 4076.735 kb on - strand, within BWI76_RS19510at 4076.756 kb on - strand, within BWI76_RS19510at 4076.966 kb on + strand, within BWI76_RS19510

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,074,190 - BWI76_RS19500 0.14 -1.4
4,074,236 + BWI76_RS19500 0.18 -3.2
4,074,257 + BWI76_RS19500 0.20 +0.8
4,074,351 - BWI76_RS19500 0.28 -3.2
4,074,369 - BWI76_RS19500 0.30 +0.6
4,074,406 + +0.8
4,074,869 + BWI76_RS19500 0.73 -0.7
4,074,892 - BWI76_RS19500 0.75 -1.5
4,074,897 - BWI76_RS19500 0.75 +0.0
4,075,369 - BWI76_RS19505 0.20 +1.4
4,075,594 - BWI76_RS19505 0.44 +0.8
4,075,622 + BWI76_RS19505 0.47 +1.5
4,075,714 + BWI76_RS19505 0.57 +3.9
4,075,907 + BWI76_RS19505 0.78 +0.7
4,075,915 - BWI76_RS19505 0.79 -0.1
4,075,957 - BWI76_RS19505 0.84 +0.0
4,076,428 + -0.5
4,076,614 + BWI76_RS19510 0.15 +1.1
4,076,669 - BWI76_RS19510 0.17 -0.1
4,076,679 - BWI76_RS19510 0.18 -0.2
4,076,735 - BWI76_RS19510 0.20 +0.4
4,076,756 - BWI76_RS19510 0.21 -0.1
4,076,966 + BWI76_RS19510 0.30 +1.7

Or see this region's nucleotide sequence