Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18480 and BWI76_RS18485 are separated by 157 nucleotides BWI76_RS18485 and BWI76_RS18490 are separated by 126 nucleotides BWI76_RS18490 and BWI76_RS18495 overlap by 53 nucleotides
BWI76_RS18480: BWI76_RS18480 - LysR family transcriptional regulator, at 3,832,124 to 3,833,044
_RS18480
BWI76_RS18485: BWI76_RS18485 - LysR family transcriptional regulator, at 3,833,202 to 3,834,104
_RS18485
BWI76_RS18490: BWI76_RS18490 - cupin, at 3,834,231 to 3,834,638
_RS18490
BWI76_RS18495: BWI76_RS18495 - hypothetical protein, at 3,834,586 to 3,835,530
_RS18495
Position (kb)
3833
3834
3835 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3832.220 kb on - strand, within BWI76_RS18480 at 3832.375 kb on - strand, within BWI76_RS18480 at 3832.409 kb on - strand, within BWI76_RS18480 at 3832.434 kb on + strand, within BWI76_RS18480 at 3832.687 kb on + strand, within BWI76_RS18480 at 3832.787 kb on - strand, within BWI76_RS18480 at 3833.272 kb on + strand at 3833.441 kb on - strand, within BWI76_RS18485 at 3833.643 kb on - strand, within BWI76_RS18485 at 3833.758 kb on + strand, within BWI76_RS18485 at 3833.962 kb on - strand, within BWI76_RS18485 at 3833.980 kb on - strand, within BWI76_RS18485 at 3833.995 kb on - strand, within BWI76_RS18485 at 3833.995 kb on - strand, within BWI76_RS18485 at 3834.632 kb on + strand at 3834.632 kb on + strand at 3834.632 kb on + strand at 3834.632 kb on + strand at 3834.680 kb on - strand at 3834.853 kb on - strand, within BWI76_RS18495 at 3834.853 kb on - strand, within BWI76_RS18495 at 3834.894 kb on + strand, within BWI76_RS18495 at 3834.973 kb on - strand, within BWI76_RS18495
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,832,220 - BWI76_RS18480 0.10 -0.5 3,832,375 - BWI76_RS18480 0.27 -0.5 3,832,409 - BWI76_RS18480 0.31 -0.5 3,832,434 + BWI76_RS18480 0.34 +1.2 3,832,687 + BWI76_RS18480 0.61 -0.9 3,832,787 - BWI76_RS18480 0.72 +0.3 3,833,272 + -0.1 3,833,441 - BWI76_RS18485 0.26 +0.2 3,833,643 - BWI76_RS18485 0.49 -0.3 3,833,758 + BWI76_RS18485 0.62 +1.5 3,833,962 - BWI76_RS18485 0.84 -1.7 3,833,980 - BWI76_RS18485 0.86 +4.3 3,833,995 - BWI76_RS18485 0.88 +0.2 3,833,995 - BWI76_RS18485 0.88 +1.7 3,834,632 + +1.1 3,834,632 + -2.4 3,834,632 + +0.6 3,834,632 + -1.4 3,834,680 - +0.3 3,834,853 - BWI76_RS18495 0.28 -0.6 3,834,853 - BWI76_RS18495 0.28 -0.3 3,834,894 + BWI76_RS18495 0.33 -0.4 3,834,973 - BWI76_RS18495 0.41 +4.9
Or see this region's nucleotide sequence