Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16830

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16825 and BWI76_RS16830 overlap by 4 nucleotidesBWI76_RS16830 and BWI76_RS16835 are separated by 424 nucleotides BWI76_RS16825: BWI76_RS16825 - heme ABC transporter, at 3,487,957 to 3,488,982 _RS16825 BWI76_RS16830: BWI76_RS16830 - ABC transporter, at 3,488,979 to 3,489,800 _RS16830 BWI76_RS16835: BWI76_RS16835 - TonB-dependent siderophore receptor, at 3,490,225 to 3,492,378 _RS16835 Position (kb) 3488 3489 3490Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3488.148 kb on + strand, within BWI76_RS16825at 3488.253 kb on - strand, within BWI76_RS16825at 3488.499 kb on + strand, within BWI76_RS16825at 3488.599 kb on + strand, within BWI76_RS16825at 3488.607 kb on - strand, within BWI76_RS16825at 3488.667 kb on + strand, within BWI76_RS16825at 3489.236 kb on + strand, within BWI76_RS16830at 3489.349 kb on + strand, within BWI76_RS16830at 3489.441 kb on + strand, within BWI76_RS16830at 3489.450 kb on + strand, within BWI76_RS16830at 3489.461 kb on + strand, within BWI76_RS16830at 3490.065 kb on + strandat 3490.120 kb on + strandat 3490.384 kb on - strandat 3490.669 kb on - strand, within BWI76_RS16835

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,488,148 + BWI76_RS16825 0.19 -0.5
3,488,253 - BWI76_RS16825 0.29 -0.0
3,488,499 + BWI76_RS16825 0.53 +0.7
3,488,599 + BWI76_RS16825 0.63 -1.4
3,488,607 - BWI76_RS16825 0.63 -0.2
3,488,667 + BWI76_RS16825 0.69 +0.0
3,489,236 + BWI76_RS16830 0.31 +0.3
3,489,349 + BWI76_RS16830 0.45 -1.8
3,489,441 + BWI76_RS16830 0.56 +0.9
3,489,450 + BWI76_RS16830 0.57 +0.8
3,489,461 + BWI76_RS16830 0.59 +3.1
3,490,065 + -2.7
3,490,120 + +0.5
3,490,384 - +2.6
3,490,669 - BWI76_RS16835 0.21 +4.8

Or see this region's nucleotide sequence