Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15920

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15910 and BWI76_RS15915 overlap by 7 nucleotidesBWI76_RS15915 and BWI76_RS15920 are separated by 102 nucleotidesBWI76_RS15920 and BWI76_RS15925 are separated by 148 nucleotides BWI76_RS15910: BWI76_RS15910 - spermidine acetyltransferase, at 3,300,492 to 3,301,052 _RS15910 BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756 _RS15915 BWI76_RS15920: BWI76_RS15920 - hypothetical protein, at 3,301,859 to 3,302,110 _RS15920 BWI76_RS15925: BWI76_RS15925 - dimethyl sulfoxide reductase subunit A, at 3,302,259 to 3,304,694 _RS15925 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -2 -1 0 1 2at 3301.015 kb on - strandat 3301.038 kb on + strandat 3301.082 kb on - strandat 3301.114 kb on - strandat 3301.123 kb on + strand, within BWI76_RS15915at 3301.234 kb on + strand, within BWI76_RS15915at 3301.677 kb on + strand, within BWI76_RS15915at 3301.689 kb on + strandat 3301.702 kb on + strandat 3301.779 kb on - strandat 3301.871 kb on + strandat 3301.887 kb on - strand, within BWI76_RS15920at 3302.134 kb on - strandat 3302.473 kb on - strandat 3302.857 kb on - strand, within BWI76_RS15925at 3302.887 kb on - strand, within BWI76_RS15925

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,301,015 - -1.9
3,301,038 + +0.2
3,301,082 - +2.7
3,301,114 - -0.1
3,301,123 + BWI76_RS15915 0.11 -0.5
3,301,234 + BWI76_RS15915 0.26 +0.9
3,301,677 + BWI76_RS15915 0.89 +1.5
3,301,689 + -0.6
3,301,702 + -0.4
3,301,779 - -1.2
3,301,871 + +2.0
3,301,887 - BWI76_RS15920 0.11 -2.1
3,302,134 - -1.3
3,302,473 - +1.7
3,302,857 - BWI76_RS15925 0.25 +1.9
3,302,887 - BWI76_RS15925 0.26 +1.6

Or see this region's nucleotide sequence