Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15285 and BWI76_RS15290 are separated by 261 nucleotides BWI76_RS15290 and BWI76_RS15295 are separated by 17 nucleotides BWI76_RS15295 and BWI76_RS15300 are separated by 30 nucleotides BWI76_RS15300 and BWI76_RS15305 are separated by 31 nucleotides
BWI76_RS15285: BWI76_RS15285 - stress protection protein MarC, at 3,203,307 to 3,203,975
_RS15285
BWI76_RS15290: BWI76_RS15290 - transcriptional regulator, at 3,204,237 to 3,204,671
_RS15290
BWI76_RS15295: BWI76_RS15295 - MDR efflux pump AcrAB transcriptional activator MarA, at 3,204,689 to 3,205,069
_RS15295
BWI76_RS15300: BWI76_RS15300 - multiple antibiotic resistance regulatory periplasmic protein MarB, at 3,205,100 to 3,205,318
_RS15300
BWI76_RS15305: BWI76_RS15305 - O-acetylserine/cysteine exporter, at 3,205,350 to 3,206,249
_RS15305
Position (kb) 3204
3205 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 3203.446 kb on - strand, within BWI76_RS15285 at 3203.473 kb on - strand, within BWI76_RS15285 at 3203.478 kb on - strand, within BWI76_RS15285 at 3203.863 kb on + strand, within BWI76_RS15285 at 3203.942 kb on + strand at 3203.950 kb on - strand at 3204.060 kb on - strand at 3204.104 kb on + strand at 3204.104 kb on + strand at 3204.122 kb on - strand at 3204.393 kb on + strand, within BWI76_RS15290 at 3204.632 kb on + strand at 3204.875 kb on - strand, within BWI76_RS15295 at 3204.875 kb on - strand, within BWI76_RS15295 at 3204.917 kb on + strand, within BWI76_RS15295 at 3204.918 kb on + strand, within BWI76_RS15295 at 3204.926 kb on - strand, within BWI76_RS15295 at 3205.029 kb on - strand, within BWI76_RS15295 at 3205.150 kb on - strand, within BWI76_RS15300 at 3205.156 kb on - strand, within BWI76_RS15300 at 3205.163 kb on + strand, within BWI76_RS15300 at 3205.171 kb on - strand, within BWI76_RS15300 at 3205.256 kb on + strand, within BWI76_RS15300 at 3205.296 kb on + strand, within BWI76_RS15300 at 3205.560 kb on - strand, within BWI76_RS15305
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,203,446 - BWI76_RS15285 0.21 -1.6 3,203,473 - BWI76_RS15285 0.25 -0.9 3,203,478 - BWI76_RS15285 0.26 -0.3 3,203,863 + BWI76_RS15285 0.83 -0.5 3,203,942 + -0.5 3,203,950 - -1.0 3,204,060 - +3.4 3,204,104 + +0.2 3,204,104 + +0.4 3,204,122 - -1.0 3,204,393 + BWI76_RS15290 0.36 -2.0 3,204,632 + -0.9 3,204,875 - BWI76_RS15295 0.49 -1.2 3,204,875 - BWI76_RS15295 0.49 -0.2 3,204,917 + BWI76_RS15295 0.60 -0.9 3,204,918 + BWI76_RS15295 0.60 +5.0 3,204,926 - BWI76_RS15295 0.62 -2.6 3,205,029 - BWI76_RS15295 0.89 -0.6 3,205,150 - BWI76_RS15300 0.23 -2.1 3,205,156 - BWI76_RS15300 0.26 -0.8 3,205,163 + BWI76_RS15300 0.29 -1.9 3,205,171 - BWI76_RS15300 0.32 -2.4 3,205,256 + BWI76_RS15300 0.71 -0.5 3,205,296 + BWI76_RS15300 0.89 +2.3 3,205,560 - BWI76_RS15305 0.23 -0.8
Or see this region's nucleotide sequence