Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15255 and BWI76_RS15260 overlap by 4 nucleotides BWI76_RS15260 and BWI76_RS15265 are separated by 19 nucleotides BWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotides BWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides
BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330
_RS15255
BWI76_RS15260: BWI76_RS15260 - hypothetical protein, at 3,198,327 to 3,198,797
_RS15260
BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097
_RS15265
BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028
_RS15270
BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829
_RS15275
Position (kb)
3198
3199
3200
3201 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 3198.582 kb on + strand, within BWI76_RS15260 at 3199.228 kb on - strand, within BWI76_RS15265 at 3199.362 kb on + strand, within BWI76_RS15265 at 3199.771 kb on + strand, within BWI76_RS15265 at 3199.810 kb on + strand, within BWI76_RS15265 at 3199.825 kb on + strand, within BWI76_RS15265 at 3199.860 kb on - strand, within BWI76_RS15265 at 3199.892 kb on + strand, within BWI76_RS15265 at 3199.906 kb on - strand, within BWI76_RS15265 at 3200.165 kb on + strand at 3200.241 kb on - strand at 3200.246 kb on - strand at 3200.246 kb on - strand at 3200.653 kb on + strand, within BWI76_RS15270 at 3200.875 kb on + strand, within BWI76_RS15270 at 3200.896 kb on + strand, within BWI76_RS15270
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,198,582 + BWI76_RS15260 0.54 +0.5 3,199,228 - BWI76_RS15265 0.32 +1.6 3,199,362 + BWI76_RS15265 0.43 +1.1 3,199,771 + BWI76_RS15265 0.74 +0.1 3,199,810 + BWI76_RS15265 0.78 -0.8 3,199,825 + BWI76_RS15265 0.79 -0.1 3,199,860 - BWI76_RS15265 0.81 +1.3 3,199,892 + BWI76_RS15265 0.84 +5.1 3,199,906 - BWI76_RS15265 0.85 -1.3 3,200,165 + -0.6 3,200,241 - -1.5 3,200,246 - +0.4 3,200,246 - -0.8 3,200,653 + BWI76_RS15270 0.52 +1.1 3,200,875 + BWI76_RS15270 0.80 +0.3 3,200,896 + BWI76_RS15270 0.83 +0.7
Or see this region's nucleotide sequence