Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15265

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15255 and BWI76_RS15260 overlap by 4 nucleotidesBWI76_RS15260 and BWI76_RS15265 are separated by 19 nucleotidesBWI76_RS15265 and BWI76_RS15270 are separated by 142 nucleotidesBWI76_RS15270 and BWI76_RS15275 are separated by 9 nucleotides BWI76_RS15255: BWI76_RS15255 - hypothetical protein, at 3,197,158 to 3,198,330 _RS15255 BWI76_RS15260: BWI76_RS15260 - hypothetical protein, at 3,198,327 to 3,198,797 _RS15260 BWI76_RS15265: BWI76_RS15265 - hypothetical protein, at 3,198,817 to 3,200,097 _RS15265 BWI76_RS15270: BWI76_RS15270 - phenazine biosynthesis protein PhzF family, at 3,200,240 to 3,201,028 _RS15270 BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829 _RS15275 Position (kb) 3198 3199 3200 3201Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3198.582 kb on + strand, within BWI76_RS15260at 3199.228 kb on - strand, within BWI76_RS15265at 3199.362 kb on + strand, within BWI76_RS15265at 3199.771 kb on + strand, within BWI76_RS15265at 3199.810 kb on + strand, within BWI76_RS15265at 3199.825 kb on + strand, within BWI76_RS15265at 3199.860 kb on - strand, within BWI76_RS15265at 3199.892 kb on + strand, within BWI76_RS15265at 3199.906 kb on - strand, within BWI76_RS15265at 3200.165 kb on + strandat 3200.241 kb on - strandat 3200.246 kb on - strandat 3200.246 kb on - strandat 3200.653 kb on + strand, within BWI76_RS15270at 3200.875 kb on + strand, within BWI76_RS15270at 3200.896 kb on + strand, within BWI76_RS15270

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,198,582 + BWI76_RS15260 0.54 +0.5
3,199,228 - BWI76_RS15265 0.32 +1.6
3,199,362 + BWI76_RS15265 0.43 +1.1
3,199,771 + BWI76_RS15265 0.74 +0.1
3,199,810 + BWI76_RS15265 0.78 -0.8
3,199,825 + BWI76_RS15265 0.79 -0.1
3,199,860 - BWI76_RS15265 0.81 +1.3
3,199,892 + BWI76_RS15265 0.84 +5.1
3,199,906 - BWI76_RS15265 0.85 -1.3
3,200,165 + -0.6
3,200,241 - -1.5
3,200,246 - +0.4
3,200,246 - -0.8
3,200,653 + BWI76_RS15270 0.52 +1.1
3,200,875 + BWI76_RS15270 0.80 +0.3
3,200,896 + BWI76_RS15270 0.83 +0.7

Or see this region's nucleotide sequence