Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14525

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14520 and BWI76_RS14525 are separated by 165 nucleotidesBWI76_RS14525 and BWI76_RS14530 are separated by 182 nucleotides BWI76_RS14520: BWI76_RS14520 - hypothetical protein, at 3,032,908 to 3,034,710 _RS14520 BWI76_RS14525: BWI76_RS14525 - AraC family transcriptional regulator, at 3,034,876 to 3,035,835 _RS14525 BWI76_RS14530: BWI76_RS14530 - non-ribosomal peptide synthetase, at 3,036,018 to 3,042,116 _RS14530 Position (kb) 3034 3035 3036Strain fitness (log2 ratio) -1 0 1 2at 3034.100 kb on + strand, within BWI76_RS14520at 3034.181 kb on - strand, within BWI76_RS14520at 3034.362 kb on + strand, within BWI76_RS14520at 3034.391 kb on - strand, within BWI76_RS14520at 3034.451 kb on + strand, within BWI76_RS14520at 3034.481 kb on - strand, within BWI76_RS14520at 3034.539 kb on - strandat 3034.541 kb on - strandat 3034.832 kb on + strandat 3034.845 kb on - strandat 3034.847 kb on + strandat 3034.996 kb on + strand, within BWI76_RS14525at 3035.061 kb on + strand, within BWI76_RS14525at 3035.205 kb on - strand, within BWI76_RS14525at 3035.230 kb on - strand, within BWI76_RS14525at 3035.456 kb on + strand, within BWI76_RS14525at 3035.754 kb on - strandat 3035.754 kb on - strandat 3036.162 kb on + strandat 3036.170 kb on - strandat 3036.170 kb on - strandat 3036.808 kb on - strand, within BWI76_RS14530

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,034,100 + BWI76_RS14520 0.66 -0.1
3,034,181 - BWI76_RS14520 0.71 -1.5
3,034,362 + BWI76_RS14520 0.81 +0.2
3,034,391 - BWI76_RS14520 0.82 -0.2
3,034,451 + BWI76_RS14520 0.86 -0.9
3,034,481 - BWI76_RS14520 0.87 +0.0
3,034,539 - +0.5
3,034,541 - -1.1
3,034,832 + +0.1
3,034,845 - +0.2
3,034,847 + +1.1
3,034,996 + BWI76_RS14525 0.12 +0.0
3,035,061 + BWI76_RS14525 0.19 +1.0
3,035,205 - BWI76_RS14525 0.34 +2.7
3,035,230 - BWI76_RS14525 0.37 +0.1
3,035,456 + BWI76_RS14525 0.60 +0.7
3,035,754 - +0.0
3,035,754 - +0.6
3,036,162 + +0.8
3,036,170 - +0.1
3,036,170 - +2.3
3,036,808 - BWI76_RS14530 0.13 -0.2

Or see this region's nucleotide sequence