Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13970

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13960 and BWI76_RS13965 are separated by 24 nucleotidesBWI76_RS13965 and BWI76_RS13970 overlap by 4 nucleotidesBWI76_RS13970 and BWI76_RS13975 are separated by 4 nucleotidesBWI76_RS13975 and BWI76_RS13980 are separated by 10 nucleotides BWI76_RS13960: BWI76_RS13960 - urea ABC transporter periplasmic protein, at 2,914,072 to 2,915,130 _RS13960 BWI76_RS13965: BWI76_RS13965 - binding-protein-dependent transport system inner membrane protein, at 2,915,155 to 2,915,970 _RS13965 BWI76_RS13970: BWI76_RS13970 - ABC transporter, at 2,915,967 to 2,916,743 _RS13970 BWI76_RS13975: BWI76_RS13975 - urea carboxylase, at 2,916,748 to 2,917,476 _RS13975 BWI76_RS13980: BWI76_RS13980 - hypothetical protein, at 2,917,487 to 2,918,122 _RS13980 Position (kb) 2915 2916 2917Strain fitness (log2 ratio) -1 0 1 2at 2915.563 kb on - strand, within BWI76_RS13965at 2915.752 kb on - strand, within BWI76_RS13965at 2916.018 kb on + strandat 2916.026 kb on - strandat 2916.576 kb on + strand, within BWI76_RS13970at 2916.777 kb on - strandat 2916.778 kb on - strandat 2917.061 kb on - strand, within BWI76_RS13975at 2917.396 kb on + strand, within BWI76_RS13975

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,915,563 - BWI76_RS13965 0.50 +0.6
2,915,752 - BWI76_RS13965 0.73 -0.8
2,916,018 + +2.2
2,916,026 - -0.7
2,916,576 + BWI76_RS13970 0.78 -1.3
2,916,777 - -0.4
2,916,778 - +0.4
2,917,061 - BWI76_RS13975 0.43 -0.2
2,917,396 + BWI76_RS13975 0.89 -0.3

Or see this region's nucleotide sequence