Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13845

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13840 and BWI76_RS13845 are separated by 114 nucleotidesBWI76_RS13845 and BWI76_RS13850 overlap by 1 nucleotidesBWI76_RS13850 and BWI76_RS13855 are separated by 79 nucleotides BWI76_RS13840: BWI76_RS13840 - MBL fold metallo-hydrolase, at 2,887,369 to 2,888,220 _RS13840 BWI76_RS13845: BWI76_RS13845 - LysR family transcriptional regulator, at 2,888,335 to 2,889,237 _RS13845 BWI76_RS13850: BWI76_RS13850 - N-acetyltransferase, at 2,889,237 to 2,889,716 _RS13850 BWI76_RS13855: BWI76_RS13855 - peroxiredoxin, at 2,889,796 to 2,890,227 _RS13855 Position (kb) 2888 2889 2890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2887.425 kb on - strandat 2887.853 kb on + strand, within BWI76_RS13840at 2887.917 kb on - strand, within BWI76_RS13840at 2888.086 kb on - strand, within BWI76_RS13840at 2888.096 kb on - strand, within BWI76_RS13840at 2888.096 kb on - strand, within BWI76_RS13840at 2888.177 kb on + strandat 2888.177 kb on + strandat 2888.340 kb on - strandat 2888.441 kb on + strand, within BWI76_RS13845at 2888.468 kb on + strand, within BWI76_RS13845at 2888.608 kb on - strand, within BWI76_RS13845at 2888.681 kb on + strand, within BWI76_RS13845at 2888.820 kb on + strand, within BWI76_RS13845at 2888.820 kb on + strand, within BWI76_RS13845at 2889.458 kb on + strand, within BWI76_RS13850at 2889.509 kb on - strand, within BWI76_RS13850at 2889.546 kb on + strand, within BWI76_RS13850at 2889.654 kb on - strand, within BWI76_RS13850at 2889.718 kb on - strandat 2889.763 kb on - strandat 2889.919 kb on + strand, within BWI76_RS13855at 2889.989 kb on + strand, within BWI76_RS13855at 2890.008 kb on + strand, within BWI76_RS13855at 2890.215 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,887,425 - -0.4
2,887,853 + BWI76_RS13840 0.57 -0.2
2,887,917 - BWI76_RS13840 0.64 -0.9
2,888,086 - BWI76_RS13840 0.84 -1.9
2,888,096 - BWI76_RS13840 0.85 -0.4
2,888,096 - BWI76_RS13840 0.85 -1.4
2,888,177 + -2.7
2,888,177 + -1.0
2,888,340 - -1.5
2,888,441 + BWI76_RS13845 0.12 -0.3
2,888,468 + BWI76_RS13845 0.15 -0.2
2,888,608 - BWI76_RS13845 0.30 +0.2
2,888,681 + BWI76_RS13845 0.38 -0.9
2,888,820 + BWI76_RS13845 0.54 +5.7
2,888,820 + BWI76_RS13845 0.54 -0.6
2,889,458 + BWI76_RS13850 0.46 +0.0
2,889,509 - BWI76_RS13850 0.57 -0.2
2,889,546 + BWI76_RS13850 0.64 -2.8
2,889,654 - BWI76_RS13850 0.87 +0.0
2,889,718 - +0.7
2,889,763 - -0.3
2,889,919 + BWI76_RS13855 0.28 +1.4
2,889,989 + BWI76_RS13855 0.45 +0.3
2,890,008 + BWI76_RS13855 0.49 +0.2
2,890,215 + -0.1

Or see this region's nucleotide sequence