Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13630

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13620 and BWI76_RS13625 are separated by 145 nucleotidesBWI76_RS13625 and BWI76_RS13630 are separated by 214 nucleotidesBWI76_RS13630 and BWI76_RS13635 overlap by 4 nucleotides BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863 _RS13620 BWI76_RS13625: BWI76_RS13625 - hypothetical protein, at 2,840,009 to 2,840,590 _RS13625 BWI76_RS13630: BWI76_RS13630 - ABC transporter, at 2,840,805 to 2,841,506 _RS13630 BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471 _RS13635 Position (kb) 2840 2841 2842Strain fitness (log2 ratio) -2 -1 0 1 2at 2839.827 kb on + strandat 2839.843 kb on - strandat 2839.858 kb on + strandat 2839.870 kb on + strandat 2839.934 kb on - strandat 2840.157 kb on + strand, within BWI76_RS13625at 2840.371 kb on + strand, within BWI76_RS13625at 2840.492 kb on - strand, within BWI76_RS13625at 2840.546 kb on - strandat 2840.672 kb on + strandat 2840.701 kb on - strandat 2840.769 kb on + strandat 2840.905 kb on - strand, within BWI76_RS13630at 2841.158 kb on + strand, within BWI76_RS13630at 2841.166 kb on - strand, within BWI76_RS13630at 2841.243 kb on - strand, within BWI76_RS13630at 2841.320 kb on - strandat 2841.396 kb on + strand, within BWI76_RS13630at 2841.466 kb on - strandat 2841.823 kb on + strand, within BWI76_RS13635at 2842.030 kb on - strand, within BWI76_RS13635at 2842.254 kb on - strand, within BWI76_RS13635

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,839,827 + +1.4
2,839,843 - +0.7
2,839,858 + -0.8
2,839,870 + -0.9
2,839,934 - -0.5
2,840,157 + BWI76_RS13625 0.25 -1.0
2,840,371 + BWI76_RS13625 0.62 +1.1
2,840,492 - BWI76_RS13625 0.83 -0.9
2,840,546 - -0.9
2,840,672 + -0.4
2,840,701 - -1.6
2,840,769 + -0.5
2,840,905 - BWI76_RS13630 0.14 +1.5
2,841,158 + BWI76_RS13630 0.50 -0.2
2,841,166 - BWI76_RS13630 0.51 +2.3
2,841,243 - BWI76_RS13630 0.62 -2.1
2,841,320 - +0.5
2,841,396 + BWI76_RS13630 0.84 -0.4
2,841,466 - -0.3
2,841,823 + BWI76_RS13635 0.33 +0.5
2,842,030 - BWI76_RS13635 0.54 +0.6
2,842,254 - BWI76_RS13635 0.78 -0.9

Or see this region's nucleotide sequence