Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13505

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13500 and BWI76_RS13505 are separated by 263 nucleotidesBWI76_RS13505 and BWI76_RS13510 are separated by 171 nucleotidesBWI76_RS13510 and BWI76_RS13515 are separated by 49 nucleotides BWI76_RS13500: BWI76_RS13500 - TonB-dependent receptor, at 2,813,604 to 2,815,715 _RS13500 BWI76_RS13505: BWI76_RS13505 - putative receptor, at 2,815,979 to 2,817,040 _RS13505 BWI76_RS13510: BWI76_RS13510 - YgdI/YgdR family lipoprotein, at 2,817,212 to 2,817,433 _RS13510 BWI76_RS13515: BWI76_RS13515 - amino acid permease, at 2,817,483 to 2,818,940 _RS13515 Position (kb) 2815 2816 2817 2818Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2814.993 kb on - strand, within BWI76_RS13500at 2814.993 kb on - strand, within BWI76_RS13500at 2815.604 kb on + strandat 2815.626 kb on - strandat 2815.628 kb on + strandat 2816.143 kb on + strand, within BWI76_RS13505at 2816.197 kb on - strand, within BWI76_RS13505at 2816.249 kb on - strand, within BWI76_RS13505at 2816.276 kb on + strand, within BWI76_RS13505at 2816.490 kb on + strand, within BWI76_RS13505at 2816.516 kb on + strand, within BWI76_RS13505at 2816.838 kb on + strandat 2816.894 kb on - strand, within BWI76_RS13505at 2816.938 kb on - strandat 2817.004 kb on + strandat 2817.049 kb on + strandat 2817.161 kb on - strandat 2817.188 kb on - strandat 2817.800 kb on - strand, within BWI76_RS13515at 2817.956 kb on - strand, within BWI76_RS13515at 2817.964 kb on + strand, within BWI76_RS13515

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,814,993 - BWI76_RS13500 0.66 -1.3
2,814,993 - BWI76_RS13500 0.66 -0.4
2,815,604 + +1.2
2,815,626 - -1.7
2,815,628 + -0.8
2,816,143 + BWI76_RS13505 0.15 +1.8
2,816,197 - BWI76_RS13505 0.21 -0.4
2,816,249 - BWI76_RS13505 0.25 -1.0
2,816,276 + BWI76_RS13505 0.28 +3.8
2,816,490 + BWI76_RS13505 0.48 +0.1
2,816,516 + BWI76_RS13505 0.51 +1.7
2,816,838 + +1.8
2,816,894 - BWI76_RS13505 0.86 +0.5
2,816,938 - -0.5
2,817,004 + -0.2
2,817,049 + -0.5
2,817,161 - -3.3
2,817,188 - -1.0
2,817,800 - BWI76_RS13515 0.22 -0.8
2,817,956 - BWI76_RS13515 0.32 -1.1
2,817,964 + BWI76_RS13515 0.33 +0.5

Or see this region's nucleotide sequence