Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12435

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12430 and BWI76_RS12435 are separated by 169 nucleotidesBWI76_RS12435 and BWI76_RS12440 are separated by 25 nucleotides BWI76_RS12430: BWI76_RS12430 - AraC family transcriptional regulator, at 2,596,466 to 2,598,772 _RS12430 BWI76_RS12435: BWI76_RS12435 - putative amino acid amidohydrolase, at 2,598,942 to 2,600,111 _RS12435 BWI76_RS12440: BWI76_RS12440 - MFS transporter, at 2,600,137 to 2,601,528 _RS12440 Position (kb) 2598 2599 2600 2601Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 2598.015 kb on - strand, within BWI76_RS12430at 2598.102 kb on + strand, within BWI76_RS12430at 2598.151 kb on + strand, within BWI76_RS12430at 2598.151 kb on + strand, within BWI76_RS12430at 2598.344 kb on - strand, within BWI76_RS12430at 2598.459 kb on - strand, within BWI76_RS12430at 2598.543 kb on - strandat 2598.719 kb on + strandat 2598.920 kb on + strandat 2598.969 kb on - strandat 2599.137 kb on - strand, within BWI76_RS12435at 2599.211 kb on + strand, within BWI76_RS12435at 2599.219 kb on - strand, within BWI76_RS12435at 2599.285 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.366 kb on - strand, within BWI76_RS12435at 2599.381 kb on - strand, within BWI76_RS12435at 2599.657 kb on + strand, within BWI76_RS12435at 2599.664 kb on + strand, within BWI76_RS12435at 2599.809 kb on + strand, within BWI76_RS12435at 2599.809 kb on + strand, within BWI76_RS12435at 2599.817 kb on - strand, within BWI76_RS12435at 2599.897 kb on + strand, within BWI76_RS12435at 2600.149 kb on - strandat 2600.452 kb on - strand, within BWI76_RS12440at 2600.454 kb on + strand, within BWI76_RS12440at 2600.462 kb on - strand, within BWI76_RS12440at 2600.564 kb on + strand, within BWI76_RS12440at 2600.739 kb on - strand, within BWI76_RS12440at 2600.821 kb on + strand, within BWI76_RS12440at 2600.980 kb on - strand, within BWI76_RS12440at 2601.066 kb on - strand, within BWI76_RS12440

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,598,015 - BWI76_RS12430 0.67 +1.1
2,598,102 + BWI76_RS12430 0.71 -0.4
2,598,151 + BWI76_RS12430 0.73 +0.6
2,598,151 + BWI76_RS12430 0.73 -0.3
2,598,344 - BWI76_RS12430 0.81 -0.4
2,598,459 - BWI76_RS12430 0.86 +0.7
2,598,543 - +0.6
2,598,719 + +2.4
2,598,920 + +3.3
2,598,969 - +0.7
2,599,137 - BWI76_RS12435 0.17 +0.2
2,599,211 + BWI76_RS12435 0.23 -1.6
2,599,219 - BWI76_RS12435 0.24 +1.3
2,599,285 - BWI76_RS12435 0.29 +7.1
2,599,366 - BWI76_RS12435 0.36 +0.1
2,599,366 - BWI76_RS12435 0.36 -0.8
2,599,366 - BWI76_RS12435 0.36 -0.1
2,599,381 - BWI76_RS12435 0.38 +2.7
2,599,657 + BWI76_RS12435 0.61 -0.4
2,599,664 + BWI76_RS12435 0.62 +0.7
2,599,809 + BWI76_RS12435 0.74 +0.0
2,599,809 + BWI76_RS12435 0.74 +0.3
2,599,817 - BWI76_RS12435 0.75 -0.5
2,599,897 + BWI76_RS12435 0.82 +0.2
2,600,149 - -0.2
2,600,452 - BWI76_RS12440 0.23 -1.6
2,600,454 + BWI76_RS12440 0.23 +0.6
2,600,462 - BWI76_RS12440 0.23 -0.0
2,600,564 + BWI76_RS12440 0.31 -0.8
2,600,739 - BWI76_RS12440 0.43 +0.7
2,600,821 + BWI76_RS12440 0.49 +0.4
2,600,980 - BWI76_RS12440 0.61 +1.6
2,601,066 - BWI76_RS12440 0.67 +0.1

Or see this region's nucleotide sequence