Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12155 and BWI76_RS12160 are separated by 57 nucleotides BWI76_RS12160 and BWI76_RS12165 overlap by 1 nucleotides BWI76_RS12165 and BWI76_RS12170 are separated by 2 nucleotides BWI76_RS12170 and BWI76_RS12175 are separated by 130 nucleotides
BWI76_RS12155: BWI76_RS12155 - hypothetical protein, at 2,548,628 to 2,548,849
_RS12155
BWI76_RS12160: BWI76_RS12160 - hypothetical protein, at 2,548,907 to 2,549,506
_RS12160
BWI76_RS12165: BWI76_RS12165 - hypothetical protein, at 2,549,506 to 2,549,712
_RS12165
BWI76_RS12170: BWI76_RS12170 - hypothetical protein, at 2,549,715 to 2,550,011
_RS12170
BWI76_RS12175: BWI76_RS12175 - hypothetical protein, at 2,550,142 to 2,550,825
_RS12175
Position (kb)
2549
2550
2551 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2548.801 kb on + strand, within BWI76_RS12155 at 2548.801 kb on + strand, within BWI76_RS12155 at 2548.878 kb on + strand at 2548.890 kb on + strand at 2548.898 kb on + strand at 2548.925 kb on - strand at 2548.934 kb on - strand at 2548.944 kb on - strand at 2548.956 kb on + strand at 2548.969 kb on - strand, within BWI76_RS12160 at 2548.969 kb on - strand, within BWI76_RS12160 at 2548.970 kb on - strand, within BWI76_RS12160 at 2549.023 kb on + strand, within BWI76_RS12160 at 2549.023 kb on + strand, within BWI76_RS12160 at 2549.023 kb on + strand, within BWI76_RS12160 at 2549.031 kb on - strand, within BWI76_RS12160 at 2549.133 kb on + strand, within BWI76_RS12160 at 2549.134 kb on + strand, within BWI76_RS12160 at 2549.313 kb on - strand, within BWI76_RS12160 at 2549.452 kb on - strand at 2549.937 kb on - strand, within BWI76_RS12170 at 2549.963 kb on + strand, within BWI76_RS12170 at 2549.989 kb on + strand at 2550.030 kb on + strand at 2550.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 2,548,801 + BWI76_RS12155 0.78 -0.6 2,548,801 + BWI76_RS12155 0.78 -0.4 2,548,878 + +0.6 2,548,890 + -0.8 2,548,898 + +1.3 2,548,925 - +0.4 2,548,934 - -2.3 2,548,944 - +0.0 2,548,956 + -0.6 2,548,969 - BWI76_RS12160 0.10 -0.8 2,548,969 - BWI76_RS12160 0.10 +1.1 2,548,970 - BWI76_RS12160 0.10 -0.2 2,549,023 + BWI76_RS12160 0.19 -0.9 2,549,023 + BWI76_RS12160 0.19 -0.6 2,549,023 + BWI76_RS12160 0.19 -1.7 2,549,031 - BWI76_RS12160 0.21 -0.8 2,549,133 + BWI76_RS12160 0.38 -0.7 2,549,134 + BWI76_RS12160 0.38 -1.4 2,549,313 - BWI76_RS12160 0.68 -0.1 2,549,452 - -1.3 2,549,937 - BWI76_RS12170 0.75 -1.8 2,549,963 + BWI76_RS12170 0.84 +3.0 2,549,989 + -1.0 2,550,030 + +0.2 2,550,058 - +1.5
Or see this region's nucleotide sequence